RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ITGAMP11215 1152 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 GSPT1P15170 499 aaKnown RBP5.05□□□□□ -1.6
CD44-235ENST00000532339 FBLP22087 321 aaKnown RBP5.05□□□□□ -1.6
CD44-235ENST00000532339 HMGB2P26583 209 aaKnown RBP5.05□□□□□ -1.6
CD44-235ENST00000532339 CDKN1CP49918 316 aaPredicted RBP5.05□□□□□ -1.6
CD44-235ENST00000532339 MGAT2Q10469 447 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 PLEKHG6Q3KR16 790 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 TMEM132CQ8N3T6 1108 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 ASB10Q8WXI3 467 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 SLC9A6Q92581 669 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 CAPNS2Q96L46 248 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 CCM2LQ9NUG4 571 aaPredicted RBP5.05□□□□□ -1.6
CD44-235ENST00000532339 AJAP1Q9UKB5 411 aaPredicted RBP5.05□□□□□ -1.6
CD44-235ENST00000532339 ABT1Q9ULW3 272 aaKnown RBP5.05□□□□□ -1.6
CD44-235ENST00000532339 RGPD8O14715 1765 aaPredicted RBP5.05□□□□□ -1.6
CD44-235ENST00000532339 CASP8AP2Q9UKL3 1982 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 KNDC1Q76NI1 1749 aa5.05□□□□□ -1.6
CD44-235ENST00000532339 A0A1B0GTW7 788 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 WNT10BO00744 389 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 ESRRBO95718 433 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 TYRP1P17643 537 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 GCSHP23434 173 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 ALDH1A3P47895 512 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 MTNR1BP49286 362 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 UBXN2BQ14CS0 331 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 RNF219Q5W0B1 726 aaPredicted RBP5.04□□□□□ -1.6
CD44-235ENST00000532339 ZNF529Q6P280 563 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 ADGRG3Q86Y34 549 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 PRPF38AQ8NAV1 312 aaKnown RBP5.04□□□□□ -1.6
CD44-235ENST00000532339 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.04□□□□□ -1.6
CD44-235ENST00000532339 STON2Q8WXE9 905 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 CYFIP2Q96F07 1278 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 ALOXE3Q9BYJ1 711 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 LDAHQ9H6V9 325 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 TYW1Q9NV66 732 aaKnown RBP5.04□□□□□ -1.6
CD44-235ENST00000532339 STK26Q9P289 416 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 PTGFRNQ9P2B2 879 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 CCNL1Q9UK58 526 aaPredicted RBP5.04□□□□□ -1.6
CD44-235ENST00000532339 ATP8A1Q9Y2Q0 1164 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 E9PCH4 1651 aa5.04□□□□□ -1.6
CD44-235ENST00000532339 KIAA1551Q9HCM1 1747 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 RANBP2P49792 3224 aaKnown RBP5.03□□□□□ -1.6
CD44-235ENST00000532339 WASHC2AQ641Q2 1341 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 WDR17Q8IZU2 1322 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 QRICH2Q9H0J4 1663 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 WNK3Q9BYP7 1800 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 ELANEP08246 267 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 PDGFRBP09619 1106 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 ALAS1P13196 640 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 DPEP1P16444 411 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 FDXRP22570 491 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 OCA2Q04671 838 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 FOXI1Q12951 378 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 MPP3Q13368 585 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 B3GNTL1Q67FW5 361 aaPredicted RBP5.03□□□□□ -1.6
CD44-235ENST00000532339 LHFPL2Q6ZUX7 228 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 SEM1Q6ZVN7 128 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 FAM43AQ8N2R8 423 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 ZNF764Q96H86 408 aaPredicted RBP5.03□□□□□ -1.6
CD44-235ENST00000532339 BOD1Q96IK1 185 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 MANSC1Q9H8J5 431 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 METTL14Q9HCE5 456 aaKnown RBP5.03□□□□□ -1.6
CD44-235ENST00000532339 TMEM74BQ9NUR3 256 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 TESQ9UGI8 421 aaKnown RBP5.03□□□□□ -1.6
CD44-235ENST00000532339 PCDHGA2Q9Y5H1 932 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 IFT172Q9UG01 1749 aa5.03□□□□□ -1.6
CD44-235ENST00000532339 ABCC6O95255 1503 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 KIF13BQ9NQT8 1826 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 MAST3O60307 1309 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 BRCA2P51587 3418 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 K7ESF4 209 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 GPR32O75388 356 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 GPANK1O95872 356 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 OSMP13725 252 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 FPR1P21462 350 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 FGFR4P22455 802 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 CXCR5P32302 372 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 ERVK-21P61565 698 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 CXADRP78310 365 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 SCAPQ12770 1279 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 SEPT2Q15019 361 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 PRR16Q569H4 304 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 FOXR2Q6PJQ5 311 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 GPR149Q86SP6 731 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 DDX42Q86XP3 938 aaKnown RBP eCLIP5.02□□□□□ -1.61
CD44-235ENST00000532339 NGDNQ8NEJ9 315 aaKnown RBP5.02□□□□□ -1.61
CD44-235ENST00000532339 ATL2Q8NHH9 583 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 CCHCR1Q8TD31 782 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 COG1Q8WTW3 980 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 FUBP1Q96AE4 644 aaKnown RBP5.02□□□□□ -1.61
CD44-235ENST00000532339 RNF31Q96EP0 1072 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 ZSWIM1Q9BR11 485 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 GALNT9Q9HCQ5 603 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 SLC23A1Q9UHI7 598 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 KCNE5Q9UJ90 142 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 DNM3Q9UQ16 869 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 SIK3Q9Y2K2 1263 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 INSL6Q9Y581 213 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 GPR45Q9Y5Y3 372 aa5.02□□□□□ -1.61
CD44-235ENST00000532339 ACTL7AQ9Y615 435 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms