RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 GNPTABQ3T906 1256 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 HAUS1Q96CS2 278 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 L3MBTL3Q96JM7 780 aaPredicted RBP20.32■□□□□ 0.84
VPS28-213ENST00000530983 TRABDQ9H4I3 376 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 ZNF302Q9NR11 478 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 GRID1Q9ULK0 1009 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 ADAMTS5Q9UNA0 930 aa20.32■□□□□ 0.84
VPS28-213ENST00000530983 CALB1P05937 261 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 HARSP12081 509 aaKnown RBP20.31■□□□□ 0.84
VPS28-213ENST00000530983 DPEP1P16444 411 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 TGFB2P61812 414 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 DNAJC3Q13217 504 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 CIAPIN1Q6FI81 312 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 DNAJC24Q6P3W2 148 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 CAPN12Q6ZSI9 719 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 STARD13Q9Y3M8 1113 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 STAM2O75886 525 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 NEBLO76041 1014 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 ASS1P00966 412 aaKnown RBP20.31■□□□□ 0.84
VPS28-213ENST00000530983 PTPN7P35236 360 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 SKIV2L2P42285 1042 aaKnown RBP20.31■□□□□ 0.84
VPS28-213ENST00000530983 SLC18A1P54219 525 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 NAA25Q14CX7 972 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 TFDP3Q5H9I0 405 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 PPP1R15BQ5SWA1 713 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 ZBED8Q8IZ13 594 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 NKD2Q969F2 451 aaPredicted RBP20.31■□□□□ 0.84
VPS28-213ENST00000530983 CAMKK2Q96RR4 588 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 TMEM121Q9BTD3 319 aa20.31■□□□□ 0.84
VPS28-213ENST00000530983 PDGFDQ9GZP0 370 aaPredicted RBP20.31■□□□□ 0.84
VPS28-213ENST00000530983 TTLL13PA6NNM8 815 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 ALOX15BO15296 676 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 UNC5CO95185 931 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 LSM8O95777 96 aaKnown RBP20.3■□□□□ 0.84
VPS28-213ENST00000530983 BRD2P25440 801 aaKnown RBP20.3■□□□□ 0.84
VPS28-213ENST00000530983 TNFSF9P41273 254 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 CDKN2BP42772 138 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 MSH2P43246 934 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 C4orf33Q8N1A6 199 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 SLC7A3Q8WY07 619 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 IMPG2Q9BZV3 1241 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 VPS37BQ9H9H4 285 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 PHTF1Q9UMS5 762 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 STK38LQ9Y2H1 464 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 ATG7O95352 703 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 ITGAVP06756 1048 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 KRT15P19012 456 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 RPA3P35244 121 aaPredicted RBP20.3■□□□□ 0.84
VPS28-213ENST00000530983 HMGCS2P54868 508 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 NBPF12Q5TAG4 269 aaPredicted RBP20.3■□□□□ 0.84
VPS28-213ENST00000530983 DCUN1D2Q6PH85 259 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 RGS9BPQ6ZS82 235 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 SLCO1B3Q9NPD5 702 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 SHOC2Q9UQ13 582 aa20.3■□□□□ 0.84
VPS28-213ENST00000530983 LRRD1A4D1F6 860 aa20.29■□□□□ 0.84
VPS28-213ENST00000530983 MYO1EQ12965 1108 aa20.29■□□□□ 0.84
VPS28-213ENST00000530983 MOGSQ13724 837 aa20.29■□□□□ 0.84
VPS28-213ENST00000530983 CAPSQ13938 189 aa20.29■□□□□ 0.84
VPS28-213ENST00000530983 SPARCL1Q14515 664 aa20.29■□□□□ 0.84
VPS28-213ENST00000530983 ZNF394Q53GI3 561 aa20.29■□□□□ 0.84
VPS28-213ENST00000530983 WDTC1Q8N5D0 677 aa20.29■□□□□ 0.84
VPS28-213ENST00000530983 ZNF280CQ8ND82 737 aa20.29■□□□□ 0.84
VPS28-213ENST00000530983 NSMCE1Q8WV22 266 aa20.29■□□□□ 0.84
VPS28-213ENST00000530983 THOC1Q96FV9 657 aaKnown RBP20.29■□□□□ 0.84
VPS28-213ENST00000530983 MYLK2Q9H1R3 596 aa20.29■□□□□ 0.84
VPS28-213ENST00000530983 ACAD9Q9H845 621 aa20.29■□□□□ 0.84
VPS28-213ENST00000530983 PCDH9Q9HC56 1237 aa20.29■□□□□ 0.84
VPS28-213ENST00000530983 SMG5Q9UPR3 1016 aaKnown RBP20.29■□□□□ 0.84
VPS28-213ENST00000530983 FAM189A1O60320 539 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 BANF1O75531 89 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 ANP32DO95626 131 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 ZNF280AP59817 542 aaPredicted RBP20.28■□□□□ 0.84
VPS28-213ENST00000530983 EN1Q05925 392 aaPredicted RBP20.28■□□□□ 0.84
VPS28-213ENST00000530983 PDK4Q16654 411 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 BRSK2Q8IWQ3 736 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 SCYL3Q8IZE3 742 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 MAB21L3Q8N8X9 362 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 SMC6Q96SB8 1091 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 TMEM134Q9H6X4 195 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 SENP1Q9P0U3 644 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 SGK1O00141 431 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 PSMC4P43686 418 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 SLC8A3P57103 927 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 MYL6P60660 151 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 FSTL1Q12841 308 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 PDIA2Q13087 525 aaKnown RBP20.28■□□□□ 0.84
VPS28-213ENST00000530983 PIGHQ14442 188 aaPredicted RBP20.28■□□□□ 0.84
VPS28-213ENST00000530983 GPAT2Q6NUI2 795 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 CENPUQ71F23 418 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 NIPA2Q8N8Q9 360 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 TMEM35BQ8NCS4 154 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 SLC35B2Q8TB61 432 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 FBF1Q8TES7 1133 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 RSRC1Q96IZ7 334 aaKnown RBP20.28■□□□□ 0.84
VPS28-213ENST00000530983 TEX13BQ9BXU2 312 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 NIFKQ9BYG3 293 aaKnown RBP20.28■□□□□ 0.84
VPS28-213ENST00000530983 TRIM6Q9C030 488 aaPredicted RBP20.28■□□□□ 0.84
VPS28-213ENST00000530983 MTMR12Q9C0I1 747 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 CISHQ9NSE2 258 aa20.28■□□□□ 0.84
VPS28-213ENST00000530983 A0A1W2PPM1 405 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms