RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SEZ6Q53EL9 994 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 ZBTB41Q5SVQ8 909 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 C1orf220Q5T0J3 134 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 TCERG1LQ5VWI1 586 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 KRT39Q6A163 491 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 GBP6Q6ZN66 633 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 C15orf39Q6ZRI6 1047 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 OTOP2Q7RTS6 562 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 DEFB128Q7Z7B8 93 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 ECHDC2Q86YB7 292 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 WDR49Q8IV35 697 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 TMEM192Q8IY95 271 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 CEP120Q8N960 986 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 CCDC127Q96BQ5 260 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 VWCEQ96DN2 955 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 IQCDQ96DY2 449 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 FAXDC2Q96IV6 333 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 GUCD1Q96NT3 240 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 ERGIC2Q96RQ1 377 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 CDX2Q99626 313 aaPredicted RBP7.98□□□□□ -1.13
CD44-228ENST00000528455 NUP58Q9BVL2 599 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 XPO4Q9C0E2 1151 aaKnown RBP7.98□□□□□ -1.13
CD44-228ENST00000528455 TMEM8AQ9HCN3 771 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 PDE11AQ9HCR9 933 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 INTS13Q9NVM9 706 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 TMEM161AQ9NX61 479 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 KANSL3Q9P2N6 904 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 MSRAQ9UJ68 235 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 POLIQ9UNA4 740 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 C2CD2Q9Y426 696 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 PCDHB7Q9Y5E2 793 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 TTC3P53804 2025 aa7.98□□□□□ -1.13
CD44-228ENST00000528455 SMIM28A0A1B0GU29 152 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 LRRIQ3A6PVS8 624 aaPredicted RBP7.97□□□□□ -1.13
CD44-228ENST00000528455 TEX33O43247 280 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 WIPF1O43516 503 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 XPOTO43592 962 aaKnown RBP7.97□□□□□ -1.13
CD44-228ENST00000528455 XYLBO75191 536 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 OFD1O75665 1012 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 BAIAP3O94812 1187 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 HARSP12081 509 aaKnown RBP7.97□□□□□ -1.13
CD44-228ENST00000528455 PAX3P23760 479 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 AKAP5P24588 427 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 CDC25BP30305 580 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 PBX1P40424 430 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 KCNMA1Q12791 1236 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 RAB30Q15771 203 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 SGSM1Q2NKQ1 1148 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 ZACNQ401N2 412 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 ZNF468Q5VIY5 522 aaPredicted RBP7.97□□□□□ -1.13
CD44-228ENST00000528455 AGMOQ6ZNB7 445 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.97□□□□□ -1.13
CD44-228ENST00000528455 PLEKHO2Q8TD55 490 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 TIFAQ96CG3 184 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 ANKRD36BP1Q96IX9 119 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 POP1Q99575 1024 aaKnown RBP7.97□□□□□ -1.13
CD44-228ENST00000528455 EDEM3Q9BZQ6 932 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 TMEM117Q9H0C3 514 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 TTYH1Q9H313 450 aaPredicted RBP7.97□□□□□ -1.13
CD44-228ENST00000528455 ZNF576Q9H609 170 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 PLCB1Q9NQ66 1216 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 SLC38A7Q9NVC3 462 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 TAB2Q9NYJ8 693 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 CNTN3Q9P232 1028 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 PARP2Q9UGN5 583 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 KLF15Q9UIH9 416 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 DAAM1Q9Y4D1 1078 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 HES2Q9Y543 173 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.97□□□□□ -1.13
CD44-228ENST00000528455 SLC4A7Q9Y6M7 1214 aa7.97□□□□□ -1.13
CD44-228ENST00000528455 TANC1Q9C0D5 1861 aa7.96□□□□□ -1.13
CD44-228ENST00000528455 CHD9Q3L8U1 2897 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.96□□□□□ -1.14
CD44-228ENST00000528455 ARL5CA6NH57 179 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 GRXCR1A8MXD5 290 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 PES1O00541 588 aaKnown RBP7.96□□□□□ -1.14
CD44-228ENST00000528455 MEFVO15553 781 aaPredicted RBP7.96□□□□□ -1.14
CD44-228ENST00000528455 ZC3H11AO75152 810 aaKnown RBP eCLIP7.96□□□□□ -1.14
CD44-228ENST00000528455 RECQL4O94761 1208 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 CST3P01034 146 aaPredicted RBP7.96□□□□□ -1.14
CD44-228ENST00000528455 TNNC2P02585 160 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 THP07101 528 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 CXCL8P10145 99 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 DLATP10515 647 aaKnown RBP7.96□□□□□ -1.14
CD44-228ENST00000528455 PON1P27169 355 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 ATICP31939 592 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 GCLMP48507 274 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 EXOC3L4Q17RC7 722 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 DCAF17Q5H9S7 520 aaPredicted RBP7.96□□□□□ -1.14
CD44-228ENST00000528455 FIGNQ5HY92 759 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 JADE1Q6IE81 842 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 SND1Q7KZF4 910 aaKnown RBP eCLIP7.96□□□□□ -1.14
CD44-228ENST00000528455 TRAPPC11Q7Z392 1133 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 RAB44Q7Z6P3 723 aaPredicted RBP7.96□□□□□ -1.14
CD44-228ENST00000528455 GSTCDQ8NEC7 633 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 FBXL13Q8NEE6 735 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 LMO3Q8TAP4 145 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 TAF4BQ92750 862 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 TOP1MTQ969P6 601 aa7.96□□□□□ -1.14
CD44-228ENST00000528455 JAKMIP2Q96AA8 810 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms