RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 MRPS35P82673 323 aaKnown RBP5.91□□□□□ -1.46
CD44-223ENST00000526553 TUBB3Q13509 450 aa5.91□□□□□ -1.46
CD44-223ENST00000526553 ERCC6LQ2NKX8 1250 aa5.91□□□□□ -1.46
CD44-223ENST00000526553 NBPF8Q3BBV2 869 aa5.91□□□□□ -1.46
CD44-223ENST00000526553 OLFML1Q6UWY5 402 aa5.91□□□□□ -1.46
CD44-223ENST00000526553 LPIN2Q92539 896 aa5.91□□□□□ -1.46
CD44-223ENST00000526553 SMOC2Q9H3U7 446 aa5.91□□□□□ -1.46
CD44-223ENST00000526553 GOLGA6AQ9NYA3 693 aa5.91□□□□□ -1.46
CD44-223ENST00000526553 LRIT1Q9P2V4 623 aa5.91□□□□□ -1.46
CD44-223ENST00000526553 HESX1Q9UBX0 185 aa5.91□□□□□ -1.46
CD44-223ENST00000526553 CPA4Q9UI42 421 aa5.91□□□□□ -1.46
CD44-223ENST00000526553 RAD54BQ9Y620 910 aa5.91□□□□□ -1.46
CD44-223ENST00000526553 A0A1W2PPL8 197 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 F5H697 171 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 MPPED1O15442 326 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 PHGDHO43175 533 aaKnown RBP5.9□□□□□ -1.46
CD44-223ENST00000526553 VPS4BO75351 444 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 UNC5CO95185 931 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 THP07101 528 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 PPP3CBP16298 524 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 CHRM3P20309 590 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 CXCR5P32302 372 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 GCLCP48506 637 aaPredicted RBP5.9□□□□□ -1.46
CD44-223ENST00000526553 NXPH1P58417 271 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 ITIH3Q06033 890 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 ZNF169Q14929 603 aaPredicted RBP5.9□□□□□ -1.46
CD44-223ENST00000526553 PTPRRQ15256 657 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 SMN1Q16637 294 aaKnown RBP5.9□□□□□ -1.46
CD44-223ENST00000526553 PRR16Q569H4 304 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 MAEAQ7L5Y9 396 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 KIAA0319LQ8IZA0 1049 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 FAM109AQ8N4B1 249 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 PCSK9Q8NBP7 692 aaKnown RBP5.9□□□□□ -1.46
CD44-223ENST00000526553 MYCBPAPQ8TBZ2 947 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 ACTRT2Q8TDY3 377 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 KBTBD7Q8WVZ9 684 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 PGBD1Q96JS3 809 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 SPATA5L1Q9BVQ7 753 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 SYNPO2LQ9H987 977 aa5.9□□□□□ -1.46
CD44-223ENST00000526553 CAPN8A6NHC0 703 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 GRPP07492 148 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 MYBP10242 640 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 NPR1P16066 1061 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 VIPR2P41587 438 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 ARFIP2P53365 341 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 GFOD2Q3B7J2 385 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 AMOTQ4VCS5 1084 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 ARHGAP29Q52LW3 1261 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 B3GALNT2Q8NCR0 500 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 TSR2Q969E8 191 aaKnown RBP5.89□□□□□ -1.47
CD44-223ENST00000526553 PDLIM2Q96JY6 352 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 NT5C1BQ96P26 610 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 MOGAT1Q96PD6 335 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 TRIM54Q9BYV2 358 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 FAM204AQ9H8W3 233 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 ZMAT3Q9HA38 289 aaKnown RBP5.89□□□□□ -1.47
CD44-223ENST00000526553 ATP6V0A4Q9HBG4 840 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 ALG13Q9NP73 1137 aaKnown RBP5.89□□□□□ -1.47
CD44-223ENST00000526553 FOXJ2Q9P0K8 574 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 C11orf21Q9P2W6 132 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.89□□□□□ -1.47
CD44-223ENST00000526553 SALL3Q9BXA9 1300 aa5.89□□□□□ -1.47
CD44-223ENST00000526553 SUV39H1O43463 412 aa5.88□□□□□ -1.47
CD44-223ENST00000526553 ATXN1LP0C7T5 689 aaKnown RBP5.88□□□□□ -1.47
CD44-223ENST00000526553 CD6P30203 668 aa5.88□□□□□ -1.47
CD44-223ENST00000526553 LOXL3P58215 753 aa5.88□□□□□ -1.47
CD44-223ENST00000526553 SIM1P81133 766 aaPredicted RBP5.88□□□□□ -1.47
CD44-223ENST00000526553 BOP1Q14137 746 aaKnown RBP5.88□□□□□ -1.47
CD44-223ENST00000526553 GBX1Q14549 363 aa5.88□□□□□ -1.47
CD44-223ENST00000526553 LONRF3Q496Y0 759 aa5.88□□□□□ -1.47
CD44-223ENST00000526553 RBM20Q5T481 1227 aaKnown RBP5.88□□□□□ -1.47
CD44-223ENST00000526553 TOR1AIP2Q8NFQ8 470 aa5.88□□□□□ -1.47
CD44-223ENST00000526553 FBXO41Q8TF61 875 aa5.88□□□□□ -1.47
CD44-223ENST00000526553 FBXL20Q96IG2 436 aa5.88□□□□□ -1.47
CD44-223ENST00000526553 SLC46A1Q96NT5 459 aa5.88□□□□□ -1.47
CD44-223ENST00000526553 NELL2Q99435 816 aa5.88□□□□□ -1.47
CD44-223ENST00000526553 P2RX7Q99572 595 aaKnown RBP5.88□□□□□ -1.47
CD44-223ENST00000526553 DPH1Q9BZG8 443 aa5.88□□□□□ -1.47
CD44-223ENST00000526553 L1RE1Q9UN81 338 aa5.88□□□□□ -1.47
CD44-223ENST00000526553 WDR27A2RRH5 827 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 CCDC151A5D8V7 595 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 ZAR1LA6NP61 321 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 VSTM5A8MXK1 200 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 DCLK1O15075 740 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 FRS3O43559 492 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 MARCH6O60337 910 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 EN2P19622 333 aaPredicted RBP5.87□□□□□ -1.47
CD44-223ENST00000526553 RARRES1P49788 294 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 HNRNPMP52272 730 aaKnown RBP eCLIP5.87□□□□□ -1.47
CD44-223ENST00000526553 IQCB1Q15051 598 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 SFRP4Q6FHJ7 346 aaPredicted RBP5.87□□□□□ -1.47
CD44-223ENST00000526553 SWSAP1Q6NVH7 229 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 SRGAP1Q7Z6B7 1085 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 SIMC1Q8NDZ2 872 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 IL31RAQ8NI17 732 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 CAGE1Q8TC20 777 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 FAM136AQ96C01 138 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 ZG16BQ96DA0 208 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 C22orf23Q9BZE7 217 aa5.87□□□□□ -1.47
CD44-223ENST00000526553 AMBRA1Q9C0C7 1298 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms