RNA–Protein interactions for RNA: ENST00000524006.5

SPIDR-222, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 970 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-222	ENST00000524006	TNPO2	O14787	897 aa	Known RBP	11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	MYC	P01106	439 aa	Predicted RBP	11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	MYZAP	P0CAP1	466 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	PYGM	P11217	842 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	HOXD8	P13378	290 aa	Predicted RBP	11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	CAPN2	P17655	700 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	MMP8	P22894	467 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	EIF4B	P23588	611 aa	Known RBP	11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	CTGF	P29279	349 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	RAP1GAP	P47736	663 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	PSEN2	P49810	448 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	LMNB2	Q03252	620 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	PTP4A2	Q12974	167 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	PIGH	Q14442	188 aa	Predicted RBP	11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	ARHGEF6	Q15052	776 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	SLC27A1	Q6PCB7	646 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	C17orf99	Q6UX52	265 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	RUFY4	Q6ZNE9	571 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	CEP128	Q6ZU80	1094 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	ZNF365	Q70YC5	407 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	DPH6	Q7L8W6	267 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	HOOK3	Q86VS8	718 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	KATNAL2	Q8IYT4	538 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	LINC01465	Q8N7H1	131 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	UBR7	Q8N806	425 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	C12orf50	Q8NA57	414 aa	Predicted RBP	11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	TSEN2	Q8NCE0	465 aa	Known RBP	11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	NPLOC4	Q8TAT6	608 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	C18orf8	Q96DM3	657 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	ZNF560	Q96MR9	790 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	ZIM3	Q96PE6	472 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	MCEE	Q96PE7	176 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	SETD4	Q9NVD3	440 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	DPP3	Q9NY33	737 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	DDX56	Q9NY93	547 aa	Known RBP	11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	PSD3	Q9NYI0	1048 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	CWC15	Q9P013	229 aa	Known RBP	11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	PCYOX1	Q9UHG3	505 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	ADAM21	Q9UKJ8	722 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	AGAP1	Q9UPQ3	857 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	PLAA	Q9Y263	795 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	DERA	Q9Y315	318 aa		11.4	□□□□□ -0.58
SPIDR-222	ENST00000524006	SMIM35	A0A1B0GVV1	85 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	NDC80	O14777	642 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	CSDE1	O75534	798 aa	Known RBP	11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	CST3	P01034	146 aa	Predicted RBP	11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	FAM153B	P0C7A2	387 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	ATF2	P15336	505 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	PSMA2	P25787	234 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	AXL	P30530	894 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	COIL	P38432	576 aa	Predicted RBP	11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	PEX5	P50542	639 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	PSMC1	P62191	440 aa	Known RBP	11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	KRT17	Q04695	432 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	PTPN11	Q06124	597 aa	Predicted RBP	11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	DHX9	Q08211	1270 aa	Known RBP	11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	MAMLD1	Q13495	774 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	STIL	Q15468	1287 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	HADH	Q16836	314 aa	Known RBP	11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	KIZ	Q2M2Z5	673 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	FAM153C	Q494X1	144 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	CEP85L	Q5SZL2	805 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	DENND2C	Q68D51	928 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	PLEKHA7	Q6IQ23	1121 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	GSTA5	Q7RTV2	222 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	CROCCP2	Q86T23	111 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	DDX42	Q86XP3	938 aa	Known RBP eCLIP	11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	HACE1	Q8IYU2	909 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	ARFGAP2	Q8N6H7	521 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	C1orf127	Q8N9H9	656 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	BBOF1	Q8ND07	529 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	C3orf20	Q8ND61	904 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	EXD1	Q8NHP7	514 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	BCO2	Q9BYV7	579 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	SMYD3	Q9H7B4	428 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	PLEKHA5	Q9HAU0	1116 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	ERVK-5	Q9HDB9	667 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	FAM153A	Q9UHL3	310 aa		11.39	□□□□□ -0.59
SPIDR-222	ENST00000524006	C17orf102	A2RUQ5	167 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006		A6NNZ2	444 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	HMGB1P1	B2RPK0	211 aa	Predicted RBP	11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	SYF2	O95926	243 aa	Known RBP	11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	F2	P00734	622 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	VDR	P11473	427 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	CYP2B6	P20813	491 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	EIF3B	P55884	814 aa	Known RBP	11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	TMEM62	Q0P6H9	643 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	SNX1	Q13596	522 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	SLMAP	Q14BN4	828 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	AMHR2	Q16671	573 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	CYP1B1	Q16678	543 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	TUBB8	Q3ZCM7	444 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	C2CD6	Q53TS8	623 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	SPDYC	Q5MJ68	293 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	MORN1	Q5T089	497 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	CYP4A22	Q5TCH4	519 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	OLFML2B	Q68BL8	750 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	AADACL2	Q6P093	401 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	DENND1B	Q6P3S1	775 aa		11.38	□□□□□ -0.59
SPIDR-222	ENST00000524006	RCOR2	Q8IZ40	523 aa		11.38	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms