RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 GTPBP4Q9BZE4 634 aaKnown RBP8.42□□□□□ -1.06
SDCBP-208ENST00000520228 API5Q9BZZ5 524 aaKnown RBP8.42□□□□□ -1.06
SDCBP-208ENST00000520228 ZFR2Q9UPR6 939 aaKnown RBP8.42□□□□□ -1.06
SDCBP-208ENST00000520228 ATRNL1Q5VV63 1379 aa8.42□□□□□ -1.06
SDCBP-208ENST00000520228 ANKRD31Q8N7Z5 1873 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 NUP98P52948 1817 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 KIF16BQ96L93 1317 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 GLTPD2A6NH11 291 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 IPO8O15397 1037 aaKnown RBP8.41□□□□□ -1.06
SDCBP-208ENST00000520228 BCAR3O75815 825 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 STC2O76061 302 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 CSF1RP07333 972 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 LPOP22079 712 aaPredicted RBP8.41□□□□□ -1.06
SDCBP-208ENST00000520228 FOXL1Q12952 345 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 FMNL3Q8IVF7 1028 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 REPS2Q8NFH8 660 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 ARHGAP45Q92619 1136 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 IL17RAQ96F46 866 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 PDCD2LQ9BRP1 358 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 PCDHA13Q9Y5I0 950 aa8.41□□□□□ -1.06
SDCBP-208ENST00000520228 TNRC6CQ9HCJ0 1690 aaKnown RBP8.4□□□□□ -1.06
SDCBP-208ENST00000520228 RTL9Q8NET4 1388 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 PPIP5K2O43314 1243 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 HOXA3O43365 443 aaPredicted RBP8.4□□□□□ -1.06
SDCBP-208ENST00000520228 AMY1AP04745 511 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 NBPF7P0C2Y1 421 aaPredicted RBP8.4□□□□□ -1.06
SDCBP-208ENST00000520228 IGHMBP2P38935 993 aaKnown RBP8.4□□□□□ -1.06
SDCBP-208ENST00000520228 CCT4P50991 539 aaKnown RBP8.4□□□□□ -1.06
SDCBP-208ENST00000520228 FXR1P51114 621 aaKnown RBP eCLIP8.4□□□□□ -1.06
SDCBP-208ENST00000520228 GPSM2P81274 684 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 IL10RAQ13651 578 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 GTF2H3Q13889 308 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 ATAT1Q5SQI0 421 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 LILRA6Q6PI73 481 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 USP45Q70EL2 814 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 MIGA2Q7L4E1 593 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 EPM2AIP1Q7L775 607 aaPredicted RBP8.4□□□□□ -1.06
SDCBP-208ENST00000520228 ZNF572Q7Z3I7 529 aaPredicted RBP8.4□□□□□ -1.06
SDCBP-208ENST00000520228 CATIPQ7Z7H3 387 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 MDM1Q8TC05 714 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 FRAT1Q92837 279 aaPredicted RBP8.4□□□□□ -1.06
SDCBP-208ENST00000520228 CYFIP2Q96F07 1278 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 ZNF512Q96ME7 567 aaPredicted RBP8.4□□□□□ -1.06
SDCBP-208ENST00000520228 VPS33BQ9H267 617 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 NMRK2Q9NPI5 230 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 PCDHB1Q9Y5F3 818 aa8.4□□□□□ -1.06
SDCBP-208ENST00000520228 COL11A2P13942 1736 aaPredicted RBP8.4□□□□□ -1.07
SDCBP-208ENST00000520228 SNED1Q8TER0 1413 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 UTYO14607 1347 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 ANKRD18BA2A2Z9 1011 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 SGTAO43765 313 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 ATP8B2P98198 1209 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 APBA1Q02410 837 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 DSC2Q02487 901 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 IFIT5Q13325 482 aaKnown RBP8.39□□□□□ -1.07
SDCBP-208ENST00000520228 EPHA10Q5JZY3 1008 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 LCE3BQ5TA77 95 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 B3GNT9Q6UX72 402 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 HPS3Q969F9 1004 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 CEP95Q96GE4 821 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 TMEM176AQ96HP8 235 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 SUCLG2Q96I99 432 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 WWC2-AS2Q96NR7 200 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 DMRTA2Q96SC8 542 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 MPHOSPH8Q99549 860 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 USP44Q9H0E7 712 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 KCNH6Q9H252 994 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 MANSC1Q9H8J5 431 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 CD248Q9HCU0 757 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 LANCL2Q9NS86 450 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.39□□□□□ -1.07
SDCBP-208ENST00000520228 POLLQ9UGP5 575 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 CNOT11Q9UKZ1 510 aaKnown RBP8.39□□□□□ -1.07
SDCBP-208ENST00000520228 SH3BP1Q9Y3L3 701 aa8.39□□□□□ -1.07
SDCBP-208ENST00000520228 SLX4Q8IY92 1834 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 DDNO94850 711 aaPredicted RBP8.38□□□□□ -1.07
SDCBP-208ENST00000520228 VEGFAP15692 232 aaPredicted RBP8.38□□□□□ -1.07
SDCBP-208ENST00000520228 ALOX15P16050 662 aaPredicted RBP8.38□□□□□ -1.07
SDCBP-208ENST00000520228 PER3P56645 1201 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 TARDBPQ13148 414 aaKnown RBP eCLIP8.38□□□□□ -1.07
SDCBP-208ENST00000520228 SP140Q13342 867 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 ICAM4Q14773 271 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 CCDC57Q2TAC2 916 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 FAM214AQ32MH5 1076 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 MFSD14BQ5SR56 506 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 FKBP15Q5T1M5 1219 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 ATF7IPQ6VMQ6 1270 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 Q6ZSN1 163 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 PDZD4Q76G19 769 aaPredicted RBP8.38□□□□□ -1.07
SDCBP-208ENST00000520228 POLNQ7Z5Q5 900 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 RHOT1Q8IXI2 618 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 ZGPATQ8N5A5 531 aaKnown RBP8.38□□□□□ -1.07
SDCBP-208ENST00000520228 MAGEB6Q8N7X4 407 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 TBC1D16Q8TBP0 767 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 Q8TCH9 128 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 KAT5Q92993 513 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 KAZALD1Q96I82 304 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 UHRF1Q96T88 793 aaPredicted RBP8.38□□□□□ -1.07
SDCBP-208ENST00000520228 EYA3Q99504 573 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 BDH2Q9BUT1 245 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms