RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 KRT19P08727 400 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 HAPLN1P10915 354 aaPredicted RBP10.42□□□□□ -0.74
RNF4-221ENST00000513643 CD44P16070 742 aaKnown RBP10.42□□□□□ -0.74
RNF4-221ENST00000513643 ATF6P18850 670 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 NR2F2P24468 414 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 LMO2P25791 158 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 RPL13P26373 211 aaKnown RBP10.42□□□□□ -0.74
RNF4-221ENST00000513643 ANP32AP39687 249 aaKnown RBP10.42□□□□□ -0.74
RNF4-221ENST00000513643 TUFMP49411 452 aaKnown RBP10.42□□□□□ -0.74
RNF4-221ENST00000513643 MYL6P60660 151 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 PPP3CAQ08209 521 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 SIGLEC14Q08ET2 396 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 TWF1Q12792 350 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 BFSP1Q12934 665 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 ADAM9Q13443 819 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 TDGQ13569 410 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 HTR4Q13639 388 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 CFAP221Q4G0U5 840 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 PABPC1LQ4VXU2 614 aaKnown RBP10.42□□□□□ -0.74
RNF4-221ENST00000513643 SLC39A12Q504Y0 691 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 INTS6LQ5JSJ4 861 aaKnown RBP10.42□□□□□ -0.74
RNF4-221ENST00000513643 ANKRD40Q6AI12 368 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 SLC44A3Q8N4M1 653 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 LEMD2Q8NC56 503 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 SPPL2BQ8TCT7 592 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 NOC3LQ8WTT2 800 aaKnown RBP10.42□□□□□ -0.74
RNF4-221ENST00000513643 SMARCE1Q969G3 411 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 PSMG2Q969U7 264 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 PGLYRP2Q96PD5 576 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 ABCB6Q9NP58 842 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 DDX43Q9NXZ2 648 aaKnown RBP10.42□□□□□ -0.74
RNF4-221ENST00000513643 GDE1Q9NZC3 331 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 MAN1B1Q9UKM7 699 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 SLC27A5Q9Y2P5 690 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 ASB3Q9Y575 518 aa10.42□□□□□ -0.74
RNF4-221ENST00000513643 MYBPHLA2RUH7 354 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 HCRTO43612 131 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 KINO60870 393 aaKnown RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 ASS1P00966 412 aaKnown RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 LRG1P02750 347 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 HMGA1P17096 107 aaKnown RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 GTF2H1P32780 548 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 PSMC2P35998 433 aaKnown RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 VAMP7P51809 220 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 PLD1Q13393 1074 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 MTMR3Q13615 1198 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 NCOA4Q13772 614 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 NFE2Q16621 373 aaPredicted RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 WDR72Q3MJ13 1102 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 INTS8Q75QN2 995 aaKnown RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 DNAJB7Q7Z6W7 309 aaPredicted RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 DCP1BQ8IZD4 617 aaKnown RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 ADGRF2Q8IZF7 708 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 HS6ST3Q8IZP7 471 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 RSAD2Q8WXG1 361 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 TAF4BQ92750 862 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 FGF14Q92915 247 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 TCEAL4Q96EI5 215 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 DHTKD1Q96HY7 919 aaPredicted RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 FUBP3Q96I24 572 aaKnown RBP eCLIP10.41□□□□□ -0.74
RNF4-221ENST00000513643 ZNF512Q96ME7 567 aaPredicted RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 DUSP9Q99956 384 aaKnown RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 MRPL45Q9BRJ2 306 aaKnown RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 RPP25Q9BUL9 199 aaKnown RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 SMOC2Q9H3U7 446 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 TRPV4Q9HBA0 871 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 IL21Q9HBE4 155 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 CRTAC1Q9NQ79 661 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 HOOK1Q9UJC3 728 aaKnown RBP10.41□□□□□ -0.74
RNF4-221ENST00000513643 CDH9Q9ULB4 789 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 DUSP12Q9UNI6 340 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 FRMD4BQ9Y2L6 1034 aa10.41□□□□□ -0.74
RNF4-221ENST00000513643 FAM86C2PA6NEL3 165 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 TMEM221A6NGB7 291 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 M0R296 226 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 ZNF197O14709 1029 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 CEBPBP17676 345 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 FCARP24071 287 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 CCNE1P24864 410 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 PCSK1P29120 753 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 WEE1P30291 646 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 GBP2P32456 591 aaPredicted RBP10.4□□□□□ -0.74
RNF4-221ENST00000513643 MAGEA11P43364 429 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 EPHB3P54753 998 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 FKBP3Q00688 224 aaKnown RBP10.4□□□□□ -0.74
RNF4-221ENST00000513643 MYL7Q01449 175 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 LRRC63Q05C16 580 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 CCDC142Q17RM4 750 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 SGSM1Q2NKQ1 1148 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 CEP135Q66GS9 1140 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 TTI2Q6NXR4 508 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 PARM1Q6UWI2 310 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 HFE2Q6ZVN8 426 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 GAREM2Q75VX8 874 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 GET4Q7L5D6 327 aaPredicted RBP10.4□□□□□ -0.74
RNF4-221ENST00000513643 TMEM150AQ86TG1 271 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 FAM186BQ8IYM0 893 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 SHKBP1Q8TBC3 707 aa10.4□□□□□ -0.74
RNF4-221ENST00000513643 SYAP1Q96A49 352 aaPredicted RBP10.4□□□□□ -0.74
RNF4-221ENST00000513643 FAXDC2Q96IV6 333 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms