RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 TASP1Q9H6P5 420 aa16.58■□□□□ 0.24
TPM3-219ENST00000509409 C8orf33Q9H7E9 229 aaPredicted RBP16.58■□□□□ 0.24
TPM3-219ENST00000509409 TFIP11Q9UBB9 837 aaKnown RBP16.58■□□□□ 0.24
TPM3-219ENST00000509409 PCDHB5Q9Y5E4 795 aa16.58■□□□□ 0.24
TPM3-219ENST00000509409 PCDHGA2Q9Y5H1 932 aa16.58■□□□□ 0.24
TPM3-219ENST00000509409 CACNA1IQ9P0X4 2223 aa16.57■□□□□ 0.24
TPM3-219ENST00000509409 NCANO14594 1321 aa16.57■□□□□ 0.24
TPM3-219ENST00000509409 SPTLC2O15270 562 aa16.57■□□□□ 0.24
TPM3-219ENST00000509409 EXTL3O43909 919 aa16.57■□□□□ 0.24
TPM3-219ENST00000509409 PRPF40AO75400 957 aaKnown RBP16.57■□□□□ 0.24
TPM3-219ENST00000509409 HAPLN1P10915 354 aaPredicted RBP16.57■□□□□ 0.24
TPM3-219ENST00000509409 PPP2R5DQ14738 602 aa16.57■□□□□ 0.24
TPM3-219ENST00000509409 STXBP4Q6ZWJ1 553 aa16.57■□□□□ 0.24
TPM3-219ENST00000509409 DCLK2Q8N568 766 aa16.57■□□□□ 0.24
TPM3-219ENST00000509409 CBWD1Q9BRT8 395 aa16.57■□□□□ 0.24
TPM3-219ENST00000509409 PI4K2AQ9BTU6 479 aa16.57■□□□□ 0.24
TPM3-219ENST00000509409 FGFBP2Q9BYJ0 223 aa16.57■□□□□ 0.24
TPM3-219ENST00000509409 MORC2Q9Y6X9 1032 aaPredicted RBP16.57■□□□□ 0.24
TPM3-219ENST00000509409 PDCD11Q14690 1871 aaKnown RBP16.56■□□□□ 0.24
TPM3-219ENST00000509409 FRMD3A2A2Y4 597 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 SLC38A8A6NNN8 435 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 TMEM191BP0C7N4 346 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 ATF6P18850 670 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 NASPP49321 788 aaPredicted RBP16.56■□□□□ 0.24
TPM3-219ENST00000509409 NRLP54845 237 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 WNT7BP56706 349 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 RBP5P82980 135 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 AMPD3Q01432 767 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 MYL7Q01449 175 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 FCHO2Q0JRZ9 810 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 ARHGAP29Q52LW3 1261 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 FOXD4L5Q5VV16 416 aaPredicted RBP16.56■□□□□ 0.24
TPM3-219ENST00000509409 PDCL2Q8N4E4 241 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 C1orf127Q8N9H9 656 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 SUMF1Q8NBK3 374 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 LINC00301Q8NCQ3 95 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 FOXD4L4Q8WXT5 416 aaPredicted RBP16.56■□□□□ 0.24
TPM3-219ENST00000509409 ANKRD36BP1Q96IX9 119 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 ZFYVE19Q96K21 471 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 MKNK1Q9BUB5 465 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 CHRDQ9H2X0 955 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 PDE11AQ9HCR9 933 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 THG1LQ9NWX6 298 aaKnown RBP16.56■□□□□ 0.24
TPM3-219ENST00000509409 DDX43Q9NXZ2 648 aaKnown RBP16.56■□□□□ 0.24
TPM3-219ENST00000509409 NCDNQ9UBB6 729 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 ITGA11Q9UKX5 1188 aa16.56■□□□□ 0.24
TPM3-219ENST00000509409 MAGED2Q9UNF1 606 aaPredicted RBP16.56■□□□□ 0.24
TPM3-219ENST00000509409 SOX9P48436 509 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 MLLT6P55198 1093 aaPredicted RBP16.55■□□□□ 0.24
TPM3-219ENST00000509409 FOXK2Q01167 660 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 LRRC32Q14392 662 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 NFE2Q16621 373 aaPredicted RBP16.55■□□□□ 0.24
TPM3-219ENST00000509409 C1orf228Q6PIY5 440 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 ZNF687Q8N1G0 1237 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 TMEM86AQ8N2M4 240 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 GPD1LQ8N335 351 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 BPIFB1Q8TDL5 484 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 SECISBP2LQ93073 1101 aaKnown RBP16.55■□□□□ 0.24
TPM3-219ENST00000509409 MSANTD3Q96H12 275 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 LRRC3BQ96PB8 259 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 ACBD6Q9BR61 282 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 IER2Q9BTL4 223 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 SLC46A2Q9BY10 475 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 FAM126AQ9BYI3 521 aaPredicted RBP16.55■□□□□ 0.24
TPM3-219ENST00000509409 TMLHEQ9NVH6 421 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 OBP2AQ9NY56 170 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 L1RE1Q9UN81 338 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 SNX9Q9Y5X1 595 aa16.55■□□□□ 0.24
TPM3-219ENST00000509409 ZNF233A6NK53 670 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 ARNTLO00327 626 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 CHRNB1P11230 501 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 ACAT1P24752 427 aaKnown RBP16.54■□□□□ 0.24
TPM3-219ENST00000509409 GPR15P49685 360 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 CCR3P51677 355 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 PLCB2Q00722 1185 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 MYO1EQ12965 1108 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 FOXD4L6Q3SYB3 417 aaPredicted RBP16.54■□□□□ 0.24
TPM3-219ENST00000509409 SDHAF4Q5VUM1 108 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 LMBRD2Q68DH5 695 aaPredicted RBP16.54■□□□□ 0.24
TPM3-219ENST00000509409 FOXD4L3Q6VB84 417 aaPredicted RBP16.54■□□□□ 0.24
TPM3-219ENST00000509409 CELF5Q8N6W0 485 aaKnown RBP16.54■□□□□ 0.24
TPM3-219ENST00000509409 LRRC52Q8N7C0 313 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 MAB21L3Q8N8X9 362 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 ZBTB44Q8NCP5 570 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 HPS3Q969F9 1004 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 DHX58Q96C10 678 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 FAM84AQ96KN4 292 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 MTMR12Q9C0I1 747 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 SMG9Q9H0W8 520 aaKnown RBP16.54■□□□□ 0.24
TPM3-219ENST00000509409 TNMDQ9H2S6 317 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 IL21Q9HBE4 155 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 PRMT8Q9NR22 394 aaPredicted RBP16.54■□□□□ 0.24
TPM3-219ENST00000509409 GTSE1Q9NYZ3 720 aa16.54■□□□□ 0.24
TPM3-219ENST00000509409 EP300Q09472 2414 aaPredicted RBP16.54■□□□□ 0.24
TPM3-219ENST00000509409 MIA3Q5JRA6 1907 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 SPECC1L-ADORA2AF8WAN1 911 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 KIAA0391O15091 583 aaKnown RBP16.53■□□□□ 0.24
TPM3-219ENST00000509409 PPP6R2O75170 966 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 PRAMEF12O95522 483 aa16.53■□□□□ 0.24
TPM3-219ENST00000509409 TNNC2P02585 160 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms