RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 CDY1Q9Y6F8 540 aa12.75□□□□□ -0.37
PDLIM5-208ENST00000504489 DOCK8Q8NF50 2099 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 TCF20Q9UGU0 1960 aaKnown RBP12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 ANAPC1Q9H1A4 1944 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 OBSL1O75147 1896 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 PATJQ8NI35 1801 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 LRRC10BA6NIK2 292 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 BECN2A8MW95 431 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 ABLIM3O94929 683 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 KRT31Q15323 416 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 VWA3BQ502W6 1294 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 TPGS2Q68CL5 300 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 OSTM1Q86WC4 334 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 GLYCTKQ8IVS8 523 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 EHBP1Q8NDI1 1231 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 ANKRD20A12PQ8NF67 263 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 ZNF461Q8TAF7 563 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 HDAC7Q8WUI4 952 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 KBTBD7Q8WVZ9 684 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 TATDN2Q93075 761 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 ELMO3Q96BJ8 720 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 ACBD6Q9BR61 282 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 NIF3L1Q9GZT8 377 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 SDCBP2Q9H190 292 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 NDST4Q9H3R1 872 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 FAM124BQ9H5Z6 455 aaPredicted RBP12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 CYP3A43Q9HB55 503 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 DDX43Q9NXZ2 648 aaKnown RBP12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 LIMA1Q9UHB6 759 aaKnown RBP12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 MAFFQ9ULX9 164 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 HCFC2Q9Y5Z7 792 aa12.74□□□□□ -0.37
PDLIM5-208ENST00000504489 MYO10Q9HD67 2058 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 LINC01565O15544 149 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 TGM5O43548 720 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 SLC34A2O95436 690 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 GLP2RO95838 553 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 GLUD1P00367 558 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 EPCAMP16422 314 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 CDK11BP21127 795 aaKnown RBP12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 PCSK1P29120 753 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 GNL1P36915 607 aaPredicted RBP12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 ASPAP45381 313 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 CDH8P55286 799 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 ROR1Q01973 937 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 GPR17Q13304 367 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 GBP6Q6ZN66 633 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 RTL10Q7L3V2 364 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 PALB2Q86YC2 1186 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 VN1R2Q8NFZ6 395 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 OR10T2Q8NGX3 314 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 FAM200AQ8TCP9 573 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 PPM1EQ8WY54 764 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 CASP10Q92851 521 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 KHSRPQ92945 711 aaKnown RBP eCLIP12.73□□□□□ -0.378e-13■■■□□ 17.4
PDLIM5-208ENST00000504489 NT5C1BQ96P26 610 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 MRPL45Q9BRJ2 306 aaKnown RBP12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 ZCWPW1Q9H0M4 648 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 SNX25Q9H3E2 840 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 TSPY26PQ9H489 355 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 PLEKHA4Q9H4M7 779 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 SMYD3Q9H7B4 428 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 TAB2Q9NYJ8 693 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 DPP7Q9UHL4 492 aa12.73□□□□□ -0.37
PDLIM5-208ENST00000504489 WDR27A2RRH5 827 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 CLSTN1O94985 981 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 TPM2P07951 284 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 WEE2P0C1S8 567 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 SRGAP2BP0DMP2 458 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 CPB1P15086 417 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 ATF2P15336 505 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 LMO2P25791 158 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 LTBRP36941 435 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 COPB1P53618 953 aaKnown RBP12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 ARPP19P56211 112 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 TSPY1Q01534 308 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 INCA1Q0VD86 236 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 SMARCB1Q12824 385 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 SKIV2LQ15477 1246 aaKnown RBP12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 EXOC3L4Q17RC7 722 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 LLGL2Q6P1M3 1020 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 ELMSAN1Q6PJG2 1045 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 SCARA5Q6ZMJ2 495 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 LUZP1Q86V48 1076 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 TTC39CQ8N584 583 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 KREMEN2Q8NCW0 462 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 OR6B3Q8NGW1 331 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 TMEM209Q96SK2 561 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 VPS16Q9H269 839 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 DZANK1Q9NVP4 752 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 CLDND1Q9NY35 253 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 GCNT4Q9P109 453 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 AFF4Q9UHB7 1163 aaKnown RBP12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 FBXW11Q9UKB1 542 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 CDH9Q9ULB4 789 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 COG5Q9UP83 839 aa12.72□□□□□ -0.37
PDLIM5-208ENST00000504489 PAPLNO95428 1278 aa12.71□□□□□ -0.37
PDLIM5-208ENST00000504489 OR4Q2P0C623 313 aa12.71□□□□□ -0.37
PDLIM5-208ENST00000504489 ATP1A3P13637 1013 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms