RNA–Protein interactions for RNA: ENST00000495899.1

MRPL55-233, Transcript of mitochondrial ribosomal protein L55, human

TSL 2

Gene MRPL55, Length 790 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-233	ENST00000495899	DHTKD1	Q96HY7	919 aa	Predicted RBP	13.28	□□□□□ -0.28
MRPL55-233	ENST00000495899	FAM84A	Q96KN4	292 aa		13.28	□□□□□ -0.28
MRPL55-233	ENST00000495899	RTP3	Q9BQQ7	232 aa		13.28	□□□□□ -0.28
MRPL55-233	ENST00000495899	MKNK1	Q9BUB5	465 aa		13.28	□□□□□ -0.28
MRPL55-233	ENST00000495899	AVEN	Q9NQS1	362 aa	Predicted RBP	13.28	□□□□□ -0.28
MRPL55-233	ENST00000495899	L1RE1	Q9UN81	338 aa		13.28	□□□□□ -0.28
MRPL55-233	ENST00000495899	INSL5	Q9Y5Q6	135 aa		13.28	□□□□□ -0.28
MRPL55-233	ENST00000495899	VWA8	A3KMH1	1905 aa		13.28	□□□□□ -0.28
MRPL55-233	ENST00000495899	NCOR1	O75376	2440 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	CETN3	O15182	167 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	MICAL2	O94851	1124 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	C4BPA	P04003	597 aa	Known RBP	13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	OR4Q2	P0C623	313 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	KRT13	P13646	458 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	FSHR	P23945	695 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	TUFM	P49411	452 aa	Known RBP	13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	VAMP7	P51809	220 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	MYL7	Q01449	175 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	LRRC63	Q05C16	580 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	NFE2	Q16621	373 aa	Predicted RBP	13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	FAM186B	Q8IYM0	893 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	ELMOD1	Q8N336	334 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	LEMD2	Q8NC56	503 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	ERCC4	Q92889	916 aa	Predicted RBP	13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	NXPE3	Q969Y0	559 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	ZNF512	Q96ME7	567 aa	Predicted RBP	13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	TSG101	Q99816	390 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	EPHX3	Q9H6B9	360 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	VRTN	Q9H8Y1	702 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	EPS15L1	Q9UBC2	864 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	DNMT3B	Q9UBC3	853 aa	Known RBP	13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	MUTYH	Q9UIF7	546 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	MAN1B1	Q9UKM7	699 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	POLI	Q9UNA4	740 aa		13.27	□□□□□ -0.29
MRPL55-233	ENST00000495899	MTMR11	A4FU01	709 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	PSMA7	O14818	248 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	TACC1	O75410	805 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	VNN2	O95498	520 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	LAMP2	P13473	410 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	ANK1	P16157	1881 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	SP100	P23497	879 aa	Predicted RBP	13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	PCSK1	P29120	753 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	GBP2	P32456	591 aa	Predicted RBP	13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	GTF2H1	P32780	548 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	ALDH1A3	P47895	512 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	PLXNA3	P51805	1871 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	EPHB3	P54753	998 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	MYL6	P60660	151 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	DLG4	P78352	724 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	FKBP3	Q00688	224 aa	Known RBP	13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	TSPY1	Q01534	308 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	DUSP4	Q13115	394 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	BIRC3	Q13489	604 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	MORC3	Q14149	939 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	PTPN21	Q16825	1174 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	SGSM1	Q2NKQ1	1148 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	TSR1	Q2NL82	804 aa	Known RBP	13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	WDR72	Q3MJ13	1102 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	ZACN	Q401N2	412 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	PABPC1L	Q4VXU2	614 aa	Known RBP	13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	SLC39A12	Q504Y0	691 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	TDRD10	Q5VZ19	366 aa	Known RBP	13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	ANKRD40	Q6AI12	368 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	IQCE	Q6IPM2	695 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	FOXR2	Q6PJQ5	311 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	LRRTM3	Q86VH5	581 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	ADGRF2	Q8IZF7	708 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	TRIML1	Q8N9V2	468 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	ATAD1	Q8NBU5	361 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	SPPL2B	Q8TCT7	592 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	TAF4B	Q92750	862 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	EDA	Q92838	391 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	PGLYRP2	Q96PD5	576 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	TMEM209	Q96SK2	561 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	MMS19	Q96T76	1030 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	ADAM33	Q9BZ11	813 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	XYLT2	Q9H1B5	865 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	DDX43	Q9NXZ2	648 aa	Known RBP	13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	IGSF9	Q9P2J2	1179 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	LIMD1	Q9UGP4	676 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	ASB3	Q9Y575	518 aa		13.26	□□□□□ -0.29
MRPL55-233	ENST00000495899	ZNF197	O14709	1029 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	SLC16A3	O15427	465 aa	Known RBP	13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	STX10	O60499	249 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	GPR37L1	O60883	481 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	N4BP1	O75113	896 aa	Known RBP	13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	RHO	P08100	348 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	WARS	P23381	471 aa	Known RBP	13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	CCNE1	P24864	410 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	TNNC1	P63316	161 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	NTHL1	P78549	312 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	TWF1	Q12792	350 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	NCOA4	Q13772	614 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	C1orf220	Q5T0J3	134 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	C6orf132	Q5T0Z8	1188 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	CYP4A22	Q5TCH4	519 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	SV2A	Q7L0J3	742 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	ZC3H3	Q8IXZ2	948 aa	Known RBP	13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	UBALD2	Q8IYN6	164 aa		13.25	□□□□□ -0.29
MRPL55-233	ENST00000495899	KBTBD7	Q8WVZ9	684 aa		13.25	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms