RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 PDIA2Q13087 525 aaKnown RBP13.99□□□□□ -0.17
USP40-214ENST00000483519 CBWD2Q8IUF1 395 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 ALLCQ8N6M5 410 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 CPA5Q8WXQ8 436 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 PTPRN2Q92932 1015 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 TSSK1BQ9BXA7 367 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 ST6GALNAC4Q9H4F1 302 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 MRPL47Q9HD33 250 aaKnown RBP13.99□□□□□ -0.17
USP40-214ENST00000483519 COL2A1P02458 1487 aaPredicted RBP13.99□□□□□ -0.17
USP40-214ENST00000483519 NFASCO94856 1347 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 TGDSO95455 350 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 POLR2MP0CAP2 368 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 SLURP2P0DP57 97 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 SERPINB3P29508 390 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 PIK3CAP42336 1068 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 SERPINB4P48594 390 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 TAS2R40P59535 323 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 GCNT1Q02742 428 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 CCDC174Q6PII3 467 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 TAS1R2Q8TE23 839 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 RBM41Q96IZ5 413 aaKnown RBP13.99□□□□□ -0.17
USP40-214ENST00000483519 KCNQ5Q9NR82 932 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 DNPEPQ9ULA0 475 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 EXOC7Q9UPT5 735 aa13.99□□□□□ -0.17
USP40-214ENST00000483519 GTF2H1P32780 548 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 NFIAQ12857 509 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 NFX1Q12986 1120 aaKnown RBP13.98□□□□□ -0.17
USP40-214ENST00000483519 SHROOM1Q2M3G4 852 aaPredicted RBP13.98□□□□□ -0.17
USP40-214ENST00000483519 KLHL38Q2WGJ6 581 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 RINLQ6ZS11 566 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 ARHGAP22Q7Z5H3 698 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 PHLDB2Q86SQ0 1253 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 SIAH1Q8IUQ4 282 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 TCP10LQ8TDR4 215 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 WDR60Q8WVS4 1066 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 TEKT1Q969V4 418 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 TMEM120AQ9BXJ8 343 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 DMAP1Q9NPF5 467 aaPredicted RBP13.98□□□□□ -0.17
USP40-214ENST00000483519 TAS2R1Q9NYW7 299 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 PCDHB2Q9Y5E7 798 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 MYPNQ86TC9 1320 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 SCNN1DP51172 638 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 BPIFB4P59827 614 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 THOC5Q13769 683 aaKnown RBP13.98□□□□□ -0.17
USP40-214ENST00000483519 RNASEH2BQ5TBB1 312 aaKnown RBP13.98□□□□□ -0.17
USP40-214ENST00000483519 HHIPL2Q6UWX4 724 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 B3GNT9Q6UX72 402 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 MON1BQ7L1V2 547 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 ZNF276Q8N554 614 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 ATP11CQ8NB49 1132 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 GLIS1Q8NBF1 620 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 SMC1BQ8NDV3 1235 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 RANBP17Q9H2T7 1088 aaKnown RBP13.98□□□□□ -0.17
USP40-214ENST00000483519 DDX43Q9NXZ2 648 aaKnown RBP13.98□□□□□ -0.17
USP40-214ENST00000483519 SCINQ9Y6U3 715 aa13.98□□□□□ -0.17
USP40-214ENST00000483519 F8W8V4 182 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 IPO5O00410 1097 aaKnown RBP13.97□□□□□ -0.17
USP40-214ENST00000483519 ZSCAN5DPP0CG00 497 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 RARBP10826 455 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 PGM1P36871 562 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 HIF1AQ16665 826 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 C6orf163Q5TEZ5 329 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 ADGRD1Q6QNK2 874 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 RCOR2Q8IZ40 523 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 CERS5Q8N5B7 392 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.97□□□□□ -0.17
USP40-214ENST00000483519 TMC2Q8TDI7 906 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 RIT2Q99578 217 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 PHACTR1Q9C0D0 580 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 VCX3BQ9H321 246 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 VCX3AQ9NNX9 186 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 PI4KBQ9UBF8 816 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 PRR12Q9ULL5 1215 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 DRG1Q9Y295 367 aaKnown RBP13.97□□□□□ -0.17
USP40-214ENST00000483519 USTQ9Y2C2 406 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 ZC3H11AO75152 810 aaKnown RBP eCLIP13.97□□□□□ -0.17
USP40-214ENST00000483519 ARP10275 920 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 RAP1GDS1P52306 607 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 UBXN2AP68543 259 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 AOC3Q16853 763 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 ZFYVE27Q5T4F4 411 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 FAM91A1Q658Y4 838 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 KAZNQ674X7 775 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 MIER3Q7Z3K6 550 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 PCGF5Q86SE9 256 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 CCDC110Q8TBZ0 833 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 EZH1Q92800 747 aaPredicted RBP13.97□□□□□ -0.17
USP40-214ENST00000483519 PAFAH2Q99487 392 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 ADAM33Q9BZ11 813 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 FBXO6Q9NRD1 293 aaPredicted RBP13.97□□□□□ -0.17
USP40-214ENST00000483519 KRT82Q9NSB4 513 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 C1orf112Q9NSG2 853 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 RABGEF1Q9UJ41 708 aa13.97□□□□□ -0.17
USP40-214ENST00000483519 MAGEC1O60732 1142 aa13.96□□□□□ -0.17
USP40-214ENST00000483519 CYP1A1P04798 512 aaPredicted RBP13.96□□□□□ -0.17
USP40-214ENST00000483519 P4HBP07237 508 aaKnown RBP13.96□□□□□ -0.17
USP40-214ENST00000483519 ATF7P17544 494 aaPredicted RBP13.96□□□□□ -0.17
USP40-214ENST00000483519 NOP14P78316 857 aaKnown RBP13.96□□□□□ -0.17
USP40-214ENST00000483519 DSG1Q02413 1049 aa13.96□□□□□ -0.17
USP40-214ENST00000483519 APOBEC3HQ6NTF7 200 aaKnown RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms