RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 NPTX2P47972 431 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 SEC24CP53992 1094 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 CNN3Q15417 329 aaKnown RBP7.45□□□□□ -1.22
USP40-213ENST00000483216 AMOTQ4VCS5 1084 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 COL23A1Q86Y22 540 aaPredicted RBP7.45□□□□□ -1.22
USP40-213ENST00000483216 IL31RAQ8NI17 732 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 ANKS1AQ92625 1134 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 CAVIN3Q969G5 261 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 C22orf23Q9BZE7 217 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 DPH1Q9BZG8 443 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 KCTD5Q9NXV2 234 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 HESX1Q9UBX0 185 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.45□□□□□ -1.22
USP40-213ENST00000483216 RAD54BQ9Y620 910 aa7.45□□□□□ -1.22
USP40-213ENST00000483216 FRMPD2Q68DX3 1309 aaPredicted RBP7.45□□□□□ -1.22
USP40-213ENST00000483216 ZCCHC6Q5VYS8 1495 aaKnown RBP7.44□□□□□ -1.22
USP40-213ENST00000483216 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 PROM1O43490 865 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 FRS3O43559 492 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 ESRRBO95718 433 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 KITP10721 976 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 CACNB3P54284 484 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 MPP3Q13368 585 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 BOP1Q14137 746 aaKnown RBP7.44□□□□□ -1.22
USP40-213ENST00000483216 SF3B3Q15393 1217 aaKnown RBP7.44□□□□□ -1.22
USP40-213ENST00000483216 CYB5RLQ6IPT4 315 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 Q6ZNX1 250 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 FAM9AQ8IZU1 332 aaPredicted RBP7.44□□□□□ -1.22
USP40-213ENST00000483216 CHFRQ96EP1 664 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 C8orf48Q96LL4 319 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 OSBPL9Q96SU4 736 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 P2RX7Q99572 595 aaKnown RBP7.44□□□□□ -1.22
USP40-213ENST00000483216 SPATA5L1Q9BVQ7 753 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 KRTAP4-2Q9BYR5 136 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 SMOC2Q9H3U7 446 aa7.44□□□□□ -1.22
USP40-213ENST00000483216 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.44□□□□□ -1.22
USP40-213ENST00000483216 WDR33Q9C0J8 1336 aaKnown RBP7.44□□□□□ -1.22
USP40-213ENST00000483216 A0A087X1B8 175 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 A0A0B4J269 797 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 MYO1FO00160 1098 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 TPP1O14773 563 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 TRIAP1O43715 76 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 GRPP07492 148 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 EN2P19622 333 aaPredicted RBP7.43□□□□□ -1.22
USP40-213ENST00000483216 ITGALP20701 1170 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 MPLP40238 635 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 NDUFV1P49821 464 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 PURAQ00577 322 aaKnown RBP7.43□□□□□ -1.22
USP40-213ENST00000483216 FOXI1Q12951 378 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 TUBB3Q13509 450 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 VWA1Q6PCB0 445 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 APOA5Q6Q788 366 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 FAM156AQ8NDB6 213 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 SLC9A6Q92581 669 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 AIFM2Q9BRQ8 373 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 IKZF4Q9H2S9 585 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 DMRT1Q9Y5R6 373 aa7.43□□□□□ -1.22
USP40-213ENST00000483216 CFAP69A5D8W1 941 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 F5H697 171 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 CHRM3P20309 590 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 PROZP22891 400 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 VIPR2P41587 438 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 GCLCP48506 637 aaPredicted RBP7.42□□□□□ -1.22
USP40-213ENST00000483216 HMGA2P52926 109 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 FAM193AP78312 1265 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 FSTL1Q12841 308 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 GALEQ14376 348 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 LONRF3Q496Y0 759 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 RNF220Q5VTB9 566 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 ZNF783Q6ZMS7 281 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 CCDC149Q6ZUS6 474 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 DGKHQ86XP1 1220 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 SLC44A3Q8N4M1 653 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 OR6B3Q8NGW1 331 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 SLC30A5Q8TAD4 765 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 SUCLG2Q96I99 432 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 SLC46A1Q96NT5 459 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 MOGAT1Q96PD6 335 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 TPCN1Q9ULQ1 816 aa7.42□□□□□ -1.22
USP40-213ENST00000483216 ISM1B1AKI9 464 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 GOLIM4O00461 696 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 DCLK1O15075 740 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 ATXN1LP0C7T5 689 aaKnown RBP7.41□□□□□ -1.22
USP40-213ENST00000483216 SLC7A1P30825 629 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 ADRA1BP35368 520 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 FOLR3P41439 243 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 IQCB1Q15051 598 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 LMBRD2Q68DH5 695 aaPredicted RBP7.41□□□□□ -1.22
USP40-213ENST00000483216 KIAA0895LQ68EN5 471 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 DARS2Q6PI48 645 aaKnown RBP7.41□□□□□ -1.22
USP40-213ENST00000483216 FBXO41Q8TF61 875 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 LRTOMTQ8WZ04 291 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 LPIN2Q92539 896 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 XPR1Q9UBH6 696 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 TMX2Q9Y320 296 aa7.41□□□□□ -1.22
USP40-213ENST00000483216 BTN3A1O00481 513 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 KIF3BO15066 747 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 PEX1O43933 1283 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 CYP2C9P11712 490 aa7.4□□□□□ -1.22
USP40-213ENST00000483216 PPP3CBP16298 524 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms