RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.42□□□□□ -1.061e-6■■■■■ 46.6
VMA21-203ENST00000477649 FAM114A2Q9NRY5 505 aa8.42□□□□□ -1.06
VMA21-203ENST00000477649 SLC38A7Q9NVC3 462 aa8.42□□□□□ -1.06
VMA21-203ENST00000477649 NXF1Q9UBU9 619 aaKnown RBP8.42□□□□□ -1.06
VMA21-203ENST00000477649 PARP2Q9UGN5 583 aa8.42□□□□□ -1.06
VMA21-203ENST00000477649 PACSIN2Q9UNF0 486 aaPredicted RBP8.42□□□□□ -1.06
VMA21-203ENST00000477649 PIN4Q9Y237 131 aaKnown RBP8.42□□□□□ -1.06
VMA21-203ENST00000477649 UTP11Q9Y3A2 253 aaKnown RBP8.42□□□□□ -1.06
VMA21-203ENST00000477649 UMODL1Q5DID0 1318 aa8.42□□□□□ -1.06
VMA21-203ENST00000477649 TMEM191CA6NGB0 347 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 SIGLEC16A6NMB1 481 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 FSCN2O14926 492 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 TREHO43280 583 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 PHF2O75151 1096 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 ECM2O94769 699 aaPredicted RBP8.41□□□□□ -1.06
VMA21-203ENST00000477649 HEXIM1O94992 359 aaKnown RBP8.41□□□□□ -1.06
VMA21-203ENST00000477649 TFRCP02786 760 aaKnown RBP8.41□□□□□ -1.06
VMA21-203ENST00000477649 CD19P15391 556 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 CD58P19256 250 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 MAP2K2P36507 400 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 GABRB2P47870 512 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 DNA2P51530 1060 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 RAD23BP54727 409 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 PTPN5P54829 565 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 HTRA3P83110 453 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 DEFB115Q30KQ5 88 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 SV2CQ496J9 727 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 SPDYCQ5MJ68 293 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 ALS2CLQ60I27 953 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 DCUN1D2Q6PH85 259 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 LCLAT1Q6UWP7 414 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 RUFY4Q6ZNE9 571 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 MMS22LQ6ZRQ5 1243 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 POLNQ7Z5Q5 900 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 RNF180Q86T96 592 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 SERINC5Q86VE9 423 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 CDR2LQ86X02 465 aaPredicted RBP8.41□□□□□ -1.06
VMA21-203ENST00000477649 SLC13A5Q86YT5 568 aaPredicted RBP8.41□□□□□ -1.06
VMA21-203ENST00000477649 ZDHHC17Q8IUH5 632 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 TMEM192Q8IY95 271 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 KATNAL2Q8IYT4 538 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 MREGQ8N565 214 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 C12orf50Q8NA57 414 aaPredicted RBP8.41□□□□□ -1.06
VMA21-203ENST00000477649 KLHDC9Q8NEP7 349 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 EXD1Q8NHP7 514 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 SPATA18Q8TC71 538 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 PXYLP1Q8TE99 480 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 AENQ8WTP8 325 aaKnown RBP8.41□□□□□ -1.06
VMA21-203ENST00000477649 SEC14L1Q92503 715 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 TRIB2Q92519 343 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 SLCO2A1Q92959 643 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 LRRC45Q96CN5 670 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 C18orf8Q96DM3 657 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 ZBTB10Q96DT7 871 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 RBM41Q96IZ5 413 aaKnown RBP8.41□□□□□ -1.06
VMA21-203ENST00000477649 ZNF668Q96K58 619 aaPredicted RBP8.41□□□□□ -1.06
VMA21-203ENST00000477649 C11orf70Q9BRQ4 267 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 TSEN34Q9BSV6 310 aaKnown RBP8.41□□□□□ -1.06
VMA21-203ENST00000477649 FRMD8P1Q9BZ68 369 aaPredicted RBP8.41□□□□□ -1.06
VMA21-203ENST00000477649 EPC1Q9H2F5 836 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 UBN1Q9NPG3 1134 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 XPNPEP3Q9NQH7 507 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 GDAP2Q9NXN4 497 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 DDX56Q9NY93 547 aaKnown RBP8.41□□□□□ -1.06
VMA21-203ENST00000477649 PCYOX1Q9UHG3 505 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.41□□□□□ -1.06
VMA21-203ENST00000477649 EFR3BQ9Y2G0 817 aa8.41□□□□□ -1.06
VMA21-203ENST00000477649 TCRBV5S1A1TA0A578 114 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 ARHGEF37A1IGU5 675 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 MOXD2PA6NHM9 499 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 TMEM110-MUSTN1A8MSY1 372 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 BHMG1C9JSJ3 638 aaPredicted RBP8.4□□□□□ -1.06
VMA21-203ENST00000477649 PIRO00625 290 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 ADAMTS4O75173 837 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 RPS6KA5O75582 802 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 RECQL4O94761 1208 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 KRT7P08729 469 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 BRD2P25440 801 aaKnown RBP8.4□□□□□ -1.06
VMA21-203ENST00000477649 LRPAP1P30533 357 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 PTPN7P35236 360 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 SCNN1AP37088 669 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 AARSP49588 968 aaKnown RBP eCLIP8.4□□□□□ -1.06
VMA21-203ENST00000477649 BEX3Q00994 111 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 LMNB2Q03252 620 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 GABPB1Q06547 395 aaPredicted RBP8.4□□□□□ -1.06
VMA21-203ENST00000477649 MTMR3Q13615 1198 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 SMC1AQ14683 1233 aaKnown RBP8.4□□□□□ -1.06
VMA21-203ENST00000477649 HADHQ16836 314 aaKnown RBP8.4□□□□□ -1.06
VMA21-203ENST00000477649 NBPF20Q3BBV1 942 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 FBXO47Q5MNV8 452 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 DCAF12L1Q5VU92 463 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 ARHGAP17Q68EM7 881 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 PAXIP1Q6ZW49 1069 aaPredicted RBP8.4□□□□□ -1.06
VMA21-203ENST00000477649 ARCQ7LC44 396 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 DNAAF5Q86Y56 855 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 RCOR2Q8IZ40 523 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 TOP6BLQ8N6T0 577 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 SLC4A11Q8NBS3 891 aa8.4□□□□□ -1.06
VMA21-203ENST00000477649 C1orf131Q8NDD1 294 aaKnown RBP8.4□□□□□ -1.06
VMA21-203ENST00000477649 TRPV1Q8NER1 839 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms