RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 NGRNQ9NPE2 291 aaKnown RBP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 ENTPD7Q9NQZ7 604 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 PRKAG3Q9UGI9 489 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 DBR1Q9UK59 544 aaKnown RBP7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 INPP5FQ9Y2H2 1132 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 PCDHB2Q9Y5E7 798 aa7.53□□□□□ -1.2
CCDC88A-213ENST00000476903 CNTNAP2Q9UHC6 1331 aa7.52□□□□□ -1.2
CCDC88A-213ENST00000476903 PER2O15055 1255 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 MBTPS2O43462 519 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 TSPAN1O60635 241 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 ZC3H11AO75152 810 aaKnown RBP eCLIP7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 MED24O75448 989 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 OFD1O75665 1012 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 EYA4O95677 639 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 GLP2RO95838 553 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 NCLP19338 710 aaKnown RBP7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 MUTP22033 750 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 GLRA2P23416 452 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 HOXA11P31270 313 aaPredicted RBP7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 ARL2P36404 184 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 ZP2Q05996 745 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 COASYQ13057 564 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 CAPSQ13938 189 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 SMC1AQ14683 1233 aaKnown RBP7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 SMAD2Q15796 467 aaKnown RBP7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 UBXN11Q5T124 520 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 NOTUMQ6P988 496 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 TTLL10Q6ZVT0 673 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 TMC7Q7Z402 723 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 MRPL10Q7Z7H8 261 aaKnown RBP7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 ADHFE1Q8IWW8 467 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 SMRP1Q8NCR6 262 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 CNNM3Q8NE01 707 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 TMEM169Q96HH4 297 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 MSLNLQ96KJ4 702 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 HEXIM2Q96MH2 286 aaKnown RBP7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 FAM193BQ96PV7 902 aaPredicted RBP7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 RAB34Q9BZG1 259 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 POLR3FQ9H1D9 316 aaPredicted RBP7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 RSAD1Q9HA92 442 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 CD320Q9NPF0 282 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 UBN1Q9NPG3 1134 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 TBC1D13Q9NVG8 400 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 CLEC1BQ9P126 229 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 STK39Q9UEW8 545 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 BARX2Q9UMQ3 279 aaPredicted RBP7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 CTNND2Q9UQB3 1225 aa7.52□□□□□ -1.21
CCDC88A-213ENST00000476903 TRIP11Q15643 1979 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 A0A087WWV3 80 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 ARHGEF35A5YM69 484 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 LRRIQ4A6NIV6 560 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 MEIS3P2A8K0S8 358 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 NT5C1B-RDH14C9J2C7 533 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 LAD1O00515 517 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 ITGA4P13612 1032 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 CCT6AP40227 531 aaKnown RBP7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 TOB1P50616 345 aaPredicted RBP7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 MBTD1Q05BQ5 628 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 GIT2Q14161 759 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 PDIA5Q14554 519 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 KCNMB1Q16558 191 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 AGMOQ6ZNB7 445 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 MAEAQ7L5Y9 396 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 ZBTB8OSQ8IWT0 167 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 HACE1Q8IYU2 909 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 C4orf32Q8N8J7 132 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 CPB2Q96IY4 423 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 TMX3Q96JJ7 454 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 TRIM6Q9C030 488 aaPredicted RBP7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 GBP3Q9H0R5 595 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 CSRNP2Q9H175 543 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 C2orf40Q9H1Z8 148 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 ATXN3LQ9H3M9 355 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 EPHX3Q9H6B9 360 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 NRDE2Q9H7Z3 1164 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 GPRC5CQ9NQ84 441 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 LRWD1Q9UFC0 647 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 IPPQ9Y573 584 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 PCDHB6Q9Y5E3 794 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 SNX11Q9Y5W9 270 aa7.51□□□□□ -1.21
CCDC88A-213ENST00000476903 C2orf71A6NGG8 1288 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 HIDE1A8MVS5 230 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 B8ZZF3 427 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 PI4K2BG5E9Z4 385 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 H3BQV1 296 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 GALTP07902 379 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 ALADP13716 330 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 ARF4P18085 180 aaPredicted RBP7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 CYP11B2P19099 503 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 GJB2P29033 226 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 CA8P35219 290 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 PRPHP41219 470 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 BUD31P41223 144 aaPredicted RBP7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 NAMPTP43490 491 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 SLC11A1P49279 550 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 ID3Q02535 119 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 PPP2R5AQ15172 486 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 RILPL1Q5EBL4 403 aa7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 CDCA2Q69YH5 1023 aaPredicted RBP7.5□□□□□ -1.21
CCDC88A-213ENST00000476903 LLGL2Q6P1M3 1020 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms