RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 PRSS55Q6UWB4 352 aaPredicted RBP10.56□□□□□ -0.72
SF3A1-207ENST00000471342 ENOSF1Q7L5Y1 443 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 UNC93AQ86WB7 457 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 TTC30AQ86WT1 665 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 LRRC8AQ8IWT6 810 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 DRC7Q8IY82 874 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 ADGRF2Q8IZF7 708 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 ABI1Q8IZP0 508 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 FUKQ8N0W3 1084 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 FIBCD1Q8N539 461 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 RBBP8NLQ8NC74 664 aaPredicted RBP10.56□□□□□ -0.72
SF3A1-207ENST00000471342 OR8K1Q8NGG5 319 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 SPATA18Q8TC71 538 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 AUTS2Q8WXX7 1259 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 PIK3R5Q8WYR1 880 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 ZNF560Q96MR9 790 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 ZNF558Q96NG5 402 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 COLEC11Q9BWP8 271 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 ZCWPW1Q9H0M4 648 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 TTYH1Q9H313 450 aaPredicted RBP10.56□□□□□ -0.72
SF3A1-207ENST00000471342 FAM124BQ9H5Z6 455 aaPredicted RBP10.56□□□□□ -0.72
SF3A1-207ENST00000471342 HAUS4Q9H6D7 363 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 TAS2R14Q9NYV8 317 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.56□□□□□ -0.72
SF3A1-207ENST00000471342 REV3LO60673 3130 aa10.56□□□□□ -0.72
SF3A1-207ENST00000471342 TDRD15B5MCY1 1934 aaKnown RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 TCRBV5S1A1TA0A578 114 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 RCCD1A6NED2 376 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 TULP2O00295 520 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 PES1O00541 588 aaKnown RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 NRG2O14511 850 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 PAPLNO95428 1278 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 LCA5LO95447 670 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 ABL1P00519 1130 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 SOD2P04179 222 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 UNGP13051 313 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 CD58P19256 250 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 TRIM21P19474 475 aaKnown RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 TBXAS1P24557 533 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 CDH5P33151 784 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 GPD2P43304 727 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 SMAD3P84022 425 aaKnown RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 RNASELQ05823 741 aaKnown RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 MYO1EQ12965 1108 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 TRIM14Q14142 442 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 PTPN14Q15678 1187 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 WDR44Q5JSH3 913 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 PPP1R26Q5T8A7 1209 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 FAM171A1Q5VUB5 890 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 ARHGAP17Q68EM7 881 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 TMEM270Q6UE05 265 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 BHLHA9Q7RTU4 235 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 GPR65Q8IYL9 337 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 TMEM86AQ8N2M4 240 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 TTC9BQ8N6N2 239 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 ZNF606Q8WXB4 792 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 KHSRPQ92945 711 aaKnown RBP eCLIP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 TMEM176AQ96HP8 235 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 ZNF830Q96NB3 372 aaPredicted RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 ACBD6Q9BR61 282 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 B3GNT5Q9BYG0 378 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 NKX2-4Q9H2Z4 354 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 ALG13Q9NP73 1137 aaKnown RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 SPG21Q9NZD8 308 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 MTRRQ9UBK8 725 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 TJP2Q9UDY2 1190 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 LUC7L2Q9Y383 392 aaKnown RBP10.55□□□□□ -0.72
SF3A1-207ENST00000471342 BACE2Q9Y5Z0 518 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 IRAK3Q9Y616 596 aa10.55□□□□□ -0.72
SF3A1-207ENST00000471342 TRANK1O15050 2925 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 COL4A4P53420 1690 aaPredicted RBP10.54□□□□□ -0.72
SF3A1-207ENST00000471342 A0A087X0T9 212 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 H3BNC9 293 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 RFXAPO00287 272 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 CLDN5O00501 218 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 TADA2AO75478 443 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 ABLIM3O94929 683 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 MMEP08473 750 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 PAEPP09466 180 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 PDGFRBP09619 1106 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 FAM228BP0C875 321 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 CTSAP10619 480 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 PTPN1P18031 435 aaKnown RBP10.54□□□□□ -0.72
SF3A1-207ENST00000471342 RPL17P18621 184 aaKnown RBP10.54□□□□□ -0.72
SF3A1-207ENST00000471342 BRD2P25440 801 aaKnown RBP10.54□□□□□ -0.72
SF3A1-207ENST00000471342 SSTR3P32745 418 aaPredicted RBP10.54□□□□□ -0.72
SF3A1-207ENST00000471342 GNL1P36915 607 aaPredicted RBP10.54□□□□□ -0.72
SF3A1-207ENST00000471342 STAT1P42224 750 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 CDR1P51861 262 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 CETN1Q12798 172 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 RAPGEF1Q13905 1077 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 ZNF394Q53GI3 561 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 INTS6LQ5JSJ4 861 aaKnown RBP10.54□□□□□ -0.72
SF3A1-207ENST00000471342 DENND1BQ6P3S1 775 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 POTEHQ6S545 545 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 LCLAT1Q6UWP7 414 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 ACOT1Q86TX2 421 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 APPL2Q8NEU8 664 aa10.54□□□□□ -0.72
SF3A1-207ENST00000471342 IQCDQ96DY2 449 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms