RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CXCL8P10145 99 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 EIF4BP23588 611 aaKnown RBP9.45□□□□□ -0.9
SYNE1-217ENST00000466159 CETN2P41208 172 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 PSMC4P43686 418 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 CDH8P55286 799 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 ACTN3Q08043 901 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-217ENST00000466159 HIBCHQ6NVY1 386 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-217ENST00000466159 EFCAB12Q6NXP0 572 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 DENND1BQ6P3S1 775 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 SPOCD1Q6ZMY3 1216 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 DCPSQ96C86 337 aaKnown RBP9.45□□□□□ -0.9
SYNE1-217ENST00000466159 FZD8Q9H461 694 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 MLXIPLQ9NP71 852 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 GOLGA6L7A0A1B0GV03 622 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 TMEM120BA0PK00 339 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 LRRD1A4D1F6 860 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 GAS2O43903 313 aaKnown RBP9.45□□□□□ -0.9
SYNE1-217ENST00000466159 ATP2C2O75185 946 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 TNNC2P02585 160 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 VIMP08670 466 aaKnown RBP9.45□□□□□ -0.9
SYNE1-217ENST00000466159 CD19P15391 556 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 CDH5P33151 784 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-217ENST00000466159 RFC1P35251 1148 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-217ENST00000466159 LACTBP83111 547 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-217ENST00000466159 SURF1Q15526 300 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 WDR72Q3MJ13 1102 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 PTPN20Q4JDL3 420 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 CCDC62Q6P9F0 684 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 VSTM1Q6UX27 236 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 CCDC13Q8IYE1 715 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 BBOF1Q8ND07 529 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 ANKRD36BP1Q96IX9 119 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 RBM15Q96T37 977 aaKnown RBP eCLIP9.45□□□□□ -0.9
SYNE1-217ENST00000466159 PPP1R16BQ96T49 567 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 ZNF518BQ9C0D4 1074 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 C2orf40Q9H1Z8 148 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 RNPEPQ9H4A4 650 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 CYTH4Q9UIA0 394 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 PCDHGC3Q9UN70 934 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 PPME1Q9Y570 386 aa9.45□□□□□ -0.9
SYNE1-217ENST00000466159 DNAJC25-GNG10A0A024R161 153 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 hCG_1818297A0A087WSY0 165 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 B4GALT4O60513 344 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 SLC25A27O95847 323 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 TXNP10599 105 aaKnown RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 ARSEP51690 589 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 IGBP1P78318 339 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 MBTD1Q05BQ5 628 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 ADCY1Q08828 1119 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 MPP2Q14168 576 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 PIGHQ14442 188 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 KCTD2Q14681 263 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 SMTNL2Q2TAL5 461 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 HP1BP3Q5SSJ5 553 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 LRRC38Q5VT99 294 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 CYP4F22Q6NT55 531 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 PIGWQ7Z7B1 504 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 ANKRD42Q8N9B4 389 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 JOSD2Q8TAC2 188 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 MMP19Q99542 508 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 ELAC2Q9BQ52 826 aaKnown RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 CDT1Q9H211 546 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 CCDC134Q9H6E4 229 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 KCNK9Q9NPC2 374 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 SAE1Q9UBE0 346 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 SIX4Q9UIU6 781 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 NAALADL1Q9UQQ1 740 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 GPR25O00155 361 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 ASAP2O43150 1006 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 NFICP08651 508 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 CDKN2BP42772 138 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 MAGEA4P43358 317 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 IREB2P48200 963 aaKnown RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 LMNB2Q03252 620 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 TFDP1Q14186 410 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 EAPPQ56P03 285 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 ANKRD20A8PQ5CZ79 823 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 TFDP3Q5H9I0 405 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 KCNT1Q5JUK3 1230 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 GJC2Q5T442 439 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 KCNV1Q6PIU1 500 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 ERO1BQ86YB8 467 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 KIAA0319LQ8IZA0 1049 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 CNPY4Q8N129 248 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 ZCCHC9Q8N567 271 aaKnown RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 ALLCQ8N6M5 410 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 ARFGAP1Q8N6T3 406 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 CCDC197Q8NCU1 140 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 DYDC1Q8WWB3 177 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 CCT6BQ92526 530 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 UPF1Q92900 1129 aaKnown RBP eCLIP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 MPHOSPH6Q99547 160 aaKnown RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 TMEM121Q9BTD3 319 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 SDCBP2Q9H190 292 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 SMARCAD1Q9H4L7 1026 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 ZWILCHQ9H900 591 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 RPF1Q9H9Y2 349 aaKnown RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 ADARB2Q9NS39 739 aaKnown RBP9.44□□□□□ -0.9
SYNE1-217ENST00000466159 AGTPBP1Q9UPW5 1226 aa9.44□□□□□ -0.9
SYNE1-217ENST00000466159 CEP83Q9Y592 693 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms