RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 KXD1Q9BQD3 176 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 CYP4F11Q9HBI6 524 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 INTS13Q9NVM9 706 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 DLGAP2Q9P1A6 1054 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 MAFFQ9ULX9 164 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 R3HCC1Q9Y3T6 440 aaKnown RBP19.07■□□□□ 0.64
COL7A1-205ENST00000465238 MIA3Q5JRA6 1907 aa19.07■□□□□ 0.64
COL7A1-205ENST00000465238 ZNF292O60281 2723 aa19.06■□□□□ 0.64
COL7A1-205ENST00000465238 BICDL2A1A5D9 508 aa19.06■□□□□ 0.64
COL7A1-205ENST00000465238 DCNP07585 359 aaKnown RBP19.06■□□□□ 0.64
COL7A1-205ENST00000465238 PSMC2P35998 433 aaKnown RBP19.06■□□□□ 0.64
COL7A1-205ENST00000465238 FKBP3Q00688 224 aaKnown RBP19.06■□□□□ 0.64
COL7A1-205ENST00000465238 SLC5A9Q2M3M2 681 aa19.06■□□□□ 0.64
COL7A1-205ENST00000465238 C9orf57Q5W0N0 161 aa19.06■□□□□ 0.64
COL7A1-205ENST00000465238 LMBRD2Q68DH5 695 aaPredicted RBP19.06■□□□□ 0.64
COL7A1-205ENST00000465238 WDR49Q8IV35 697 aa19.06■□□□□ 0.64
COL7A1-205ENST00000465238 MLKLQ8NB16 471 aa19.06■□□□□ 0.64
COL7A1-205ENST00000465238 SEMA4AQ9H3S1 761 aa19.06■□□□□ 0.64
COL7A1-205ENST00000465238 PCDHB8Q9UN66 801 aa19.06■□□□□ 0.64
COL7A1-205ENST00000465238 CTNND2Q9UQB3 1225 aa19.06■□□□□ 0.64
COL7A1-205ENST00000465238 INSL5Q9Y5Q6 135 aa19.06■□□□□ 0.64
COL7A1-205ENST00000465238 TRIM49BA6NDI0 452 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 MAPK13O15264 365 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 ECI2O75521 394 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 SEC24AO95486 1093 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 KRT13P13646 458 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 PMS1P54277 932 aaKnown RBP19.05■□□□□ 0.64
COL7A1-205ENST00000465238 PAK1Q13153 545 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 MLF2Q15773 248 aaPredicted RBP19.05■□□□□ 0.64
COL7A1-205ENST00000465238 SLC44A4Q53GD3 710 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 CCDC183Q5T5S1 534 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 USP37Q86T82 979 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 FAM186BQ8IYM0 893 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 TMEM130Q8N3G9 435 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 MCRS1Q96EZ8 462 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 CGRRF1Q99675 332 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 DDX23Q9BUQ8 820 aaKnown RBP19.05■□□□□ 0.64
COL7A1-205ENST00000465238 FOXQ1Q9C009 403 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 AFF4Q9UHB7 1163 aaKnown RBP19.05■□□□□ 0.64
COL7A1-205ENST00000465238 ITGA11Q9UKX5 1188 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 CACNA1IQ9P0X4 2223 aa19.05■□□□□ 0.64
COL7A1-205ENST00000465238 EP300Q09472 2414 aaPredicted RBP19.04■□□□□ 0.64
COL7A1-205ENST00000465238 KANSL1LA0AUZ9 987 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 ANO9A1A5B4 782 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 M0QZQ0 153 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 PIRO00625 290 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 ZNF197O14709 1029 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 AKAP3O75969 853 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 MICAL2O94851 1124 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 KRT19P08727 400 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 CEBPBP17676 345 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 PAX3P23760 479 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 STX17P56962 302 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 NLRP12P59046 1061 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 INTS8Q75QN2 995 aaKnown RBP19.04■□□□□ 0.64
COL7A1-205ENST00000465238 C1orf210Q8IVY1 113 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 ELMOD1Q8N336 334 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 CSGALNACT2Q8N6G5 542 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 OR5B17Q8NGF7 314 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 TMC2Q8TDI7 906 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 PARD3BQ8TEW8 1205 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 SYAP1Q96A49 352 aaPredicted RBP19.04■□□□□ 0.64
COL7A1-205ENST00000465238 EEF2KMTQ96G04 330 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 CORO1BQ9BR76 489 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 MKNK1Q9BUB5 465 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 OXCT2Q9BYC2 517 aaPredicted RBP19.04■□□□□ 0.64
COL7A1-205ENST00000465238 MTMR12Q9C0I1 747 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 DACH1Q9UI36 760 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 AGAP1Q9UPQ3 857 aa19.04■□□□□ 0.64
COL7A1-205ENST00000465238 SCN1AP35498 2009 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 PTPRJQ12913 1337 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 PPEF2O14830 753 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 ITGB3P05106 788 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 EPB41P11171 864 aaKnown RBP19.03■□□□□ 0.64
COL7A1-205ENST00000465238 CPB1P15086 417 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 AP3M2P53677 418 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 RBP5P82980 135 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 YWHAHQ04917 246 aaPredicted RBP19.03■□□□□ 0.64
COL7A1-205ENST00000465238 ADCY1Q08828 1119 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 PRSS36Q5K4E3 855 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 CYP4A22Q5TCH4 519 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 IQCEQ6IPM2 695 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 FOXR2Q6PJQ5 311 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 SASS6Q6UVJ0 657 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 DSTYKQ6XUX3 929 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 PDZD4Q76G19 769 aaPredicted RBP19.03■□□□□ 0.64
COL7A1-205ENST00000465238 C1orf127Q8N9H9 656 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 ELSPBP1Q96BH3 223 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 FAM84AQ96KN4 292 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 OSBPL6Q9BZF3 934 aa19.03■□□□□ 0.64
COL7A1-205ENST00000465238 FANCMQ8IYD8 2048 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 LRRIQ3A6PVS8 624 aaPredicted RBP19.02■□□□□ 0.64
COL7A1-205ENST00000465238 OAZ2O95190 189 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 GLULP15104 373 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 POLR2BP30876 1174 aaKnown RBP19.02■□□□□ 0.64
COL7A1-205ENST00000465238 PNPLA4P41247 253 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 AARSP49588 968 aaKnown RBP eCLIP19.02■□□□□ 0.64
COL7A1-205ENST00000465238 TAF6P49848 677 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 VAMP7P51809 220 aa19.02■□□□□ 0.64
COL7A1-205ENST00000465238 LILRA4P59901 499 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms