RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 VPS52Q8N1B4 723 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 FBXL13Q8NEE6 735 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 RFWD2Q8NHY2 731 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 TTC17Q96AE7 1141 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 SYT15Q9BQS2 421 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 TMEM109Q9BVC6 243 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 MAF1Q9H063 256 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 USH1CQ9Y6N9 552 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 TLR3O15455 904 aaKnown RBP13.11□□□□□ -0.31
HDAC4-208ENST00000463007 KRT36O76013 467 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 GNAT1P11488 350 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 GZMAP12544 262 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 CYP1B1Q16678 543 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 TNFAIP8L3Q5GJ75 292 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 RHBDF2Q6PJF5 856 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 OTOAQ7RTW8 1153 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 CCDC125Q86Z20 511 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 LMNTD2Q8IXW0 634 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 CCDC89Q8N998 374 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 GRK7Q8WTQ7 553 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 STK32AQ8WU08 396 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 LRRN4Q8WUT4 740 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 JDP2Q8WYK2 163 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 TSC22D3Q99576 134 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 SGIP1Q9BQI5 828 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 MAK16Q9BXY0 300 aaKnown RBP13.11□□□□□ -0.31
HDAC4-208ENST00000463007 MARCOQ9UEW3 520 aaPredicted RBP13.11□□□□□ -0.31
HDAC4-208ENST00000463007 TBX20Q9UMR3 447 aa13.11□□□□□ -0.31
HDAC4-208ENST00000463007 NFASCO94856 1347 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 LRRD1A4D1F6 860 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 MTA2O94776 668 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 CYP1A2P05177 515 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 TPBGLP0DKB5 382 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 BAG6P46379 1132 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 NPTX2P47972 431 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 BLMHQ13867 455 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 BAATQ14032 418 aaPredicted RBP13.1□□□□□ -0.31
HDAC4-208ENST00000463007 MAPK6Q16659 721 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 BBS9Q3SYG4 887 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 KCNT1Q5JUK3 1230 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 SCARA3Q6AZY7 606 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 TXNRD3NBQ6F5E7 133 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 TAS1R3Q7RTX0 852 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 TTC7BQ86TV6 843 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 VTI1AQ96AJ9 217 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 RNF146Q9NTX7 359 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 MAFGO15525 162 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 MAP3K6O95382 1288 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 UBTFL6P0CB48 400 aaPredicted RBP13.1□□□□□ -0.31
HDAC4-208ENST00000463007 ZCCHC18P0CG32 403 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 T-ENOLP0DO92 83 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 ALADP13716 330 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 DSG3P32926 999 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 RTP1P59025 263 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 TFDP1Q14186 410 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 PLEKHG4Q58EX7 1191 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 MCOLN2Q8IZK6 566 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 HELQQ8TDG4 1101 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 DNAJC9Q8WXX5 260 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 SHC3Q92529 594 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 MFSD14AQ96MC6 490 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 XPNPEP1Q9NQW7 623 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 SLC17A7Q9P2U7 560 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 UVRAGQ9P2Y5 699 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 HEY2Q9UBP5 337 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 CCDC195A0A1B0GUA6 201 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 KRT1P04264 644 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 CETN2P41208 172 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 IRX4P78413 519 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 PTK6Q13882 451 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 KPNB1Q14974 876 aaKnown RBP13.1□□□□□ -0.31
HDAC4-208ENST00000463007 TMEM132BQ14DG7 1078 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 ARMC3Q5W041 872 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 TRABD2AQ86V40 505 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 ZNF280CQ8ND82 737 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 SLC7A6OSQ96CW6 309 aaPredicted RBP13.1□□□□□ -0.31
HDAC4-208ENST00000463007 C1orf112Q9NSG2 853 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 PCDHB4Q9Y5E5 795 aa13.1□□□□□ -0.31
HDAC4-208ENST00000463007 MYH9P35579 1960 aaKnown RBP13.09□□□□□ -0.31
HDAC4-208ENST00000463007 ASMTLO95671 621 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 BAG2O95816 211 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 NR3C2P08235 984 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 GPC3P51654 580 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 CLDN10P78369 228 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 MFSD7Q6UXD7 560 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 SLC25A41Q8N5S1 370 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 CFAP57Q96MR6 1250 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 ZWILCHQ9H900 591 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 C17orf75Q9HAS0 396 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 CYP39A1Q9NYL5 469 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 ZNF541Q9H0D2 1346 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 CAPN9O14815 690 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 GYG2O15488 501 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 CCND2P30279 289 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 STAT4Q14765 748 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 CLEC16AQ2KHT3 1053 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 NOL9Q5SY16 702 aaKnown RBP13.09□□□□□ -0.31
HDAC4-208ENST00000463007 RNF43Q68DV7 783 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 C15orf39Q6ZRI6 1047 aa13.09□□□□□ -0.31
HDAC4-208ENST00000463007 DPH6Q7L8W6 267 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms