RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 YIPF1Q9Y548 306 aa8.39□□□□□ -1.07
CD44-211ENST00000442151 PCDHB5Q9Y5E4 795 aa8.39□□□□□ -1.07
CD44-211ENST00000442151 PCDHGA2Q9Y5H1 932 aa8.39□□□□□ -1.07
CD44-211ENST00000442151 CLIC4Q9Y696 253 aa8.39□□□□□ -1.07
CD44-211ENST00000442151 C5orf42Q9H799 3197 aa8.39□□□□□ -1.07
CD44-211ENST00000442151 KPNA7A9QM74 516 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 K7ELQ4 463 aaPredicted RBP8.38□□□□□ -1.07
CD44-211ENST00000442151 ST8SIA5O15466 376 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 STX6O43752 255 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 PPP6R2O75170 966 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 TNNC2P02585 160 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 HSP90AA1P07900 732 aaKnown RBP8.38□□□□□ -1.07
CD44-211ENST00000442151 FAM163BP0C2L3 166 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 CEBPBP17676 345 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 GDI1P31150 447 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 TNFSF9P41273 254 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 LHX1P48742 406 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 ACOT2P49753 483 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 PDE6CP51160 858 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 CCR3P51677 355 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 KPNA1P52294 538 aaPredicted RBP8.38□□□□□ -1.07
CD44-211ENST00000442151 SPAG1Q07617 926 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 MYO1EQ12965 1108 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 FAM78AQ5JUQ0 283 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 DGKKQ5KSL6 1271 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 DPH6Q7L8W6 267 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 ASCL5Q7RTU5 278 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 DNAJB7Q7Z6W7 309 aaPredicted RBP8.38□□□□□ -1.07
CD44-211ENST00000442151 SFR1Q86XK3 245 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 HOMEZQ8IX15 550 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 LRRC52Q8N7C0 313 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 IQUBQ8NA54 791 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 CCDC26Q8TAB7 109 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 ZSCAN18Q8TBC5 510 aaPredicted RBP8.38□□□□□ -1.07
CD44-211ENST00000442151 FAM3CQ92520 227 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 RUBCNQ92622 972 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 ANKRD36BP1Q96IX9 119 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 EPSTI1Q96J88 318 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 ZCWPW1Q9H0M4 648 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 TNMDQ9H2S6 317 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 ATXN3LQ9H3M9 355 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 ZNF334Q9HCZ1 680 aaPredicted RBP8.38□□□□□ -1.07
CD44-211ENST00000442151 ZSCAN32Q9NX65 697 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 FAM13BQ9NYF5 915 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 CGNQ9P2M7 1197 aaKnown RBP8.38□□□□□ -1.07
CD44-211ENST00000442151 ITGA11Q9UKX5 1188 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 MTMR11A4FU01 709 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 ZNF233A6NK53 670 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 EXTL3O43909 919 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 PRPF40AO75400 957 aaKnown RBP8.38□□□□□ -1.07
CD44-211ENST00000442151 CSH1P0DML2 217 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 CSH2P0DML3 217 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 PCSK1P29120 753 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 CSTF1Q05048 431 aaKnown RBP8.38□□□□□ -1.07
CD44-211ENST00000442151 RESTQ13127 1097 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 TEAD2Q15562 447 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 MAPRE1Q15691 268 aaKnown RBP8.38□□□□□ -1.07
CD44-211ENST00000442151 MGAT5BQ3V5L5 792 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 ERMP1Q7Z2K6 904 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 SYNPOQ8N3V7 929 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 CEP295NLQ96MC4 621 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 HINFPQ9BQA5 517 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 ACBD6Q9BR61 282 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 FAM213AQ9BRX8 229 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 DNAI2Q9GZS0 605 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 HAPLN2Q9GZV7 340 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 TASP1Q9H6P5 420 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 KIF9Q9HAQ2 790 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 DLGAP2Q9P1A6 1054 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 CEP72Q9P209 647 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 CFAP45Q9UL16 551 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 TIMM13Q9Y5L4 95 aaPredicted RBP8.38□□□□□ -1.07
CD44-211ENST00000442151 TRIP11Q15643 1979 aa8.38□□□□□ -1.07
CD44-211ENST00000442151 MYMKA6NI61 221 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 HEPACAM2A8MVW5 462 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 ANKRD63C9JTQ0 380 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 SPTLC2O15270 562 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 FAM189A1O60320 539 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 FOXD2O60548 495 aaPredicted RBP8.37□□□□□ -1.07
CD44-211ENST00000442151 CUTAO60888 179 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 ATG13O75143 517 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 CD2BP2O95400 341 aaKnown RBP8.37□□□□□ -1.07
CD44-211ENST00000442151 YEATS4O95619 227 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 TMEM191BP0C7N4 346 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 CNR2P34972 360 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 TFAMQ00059 246 aaKnown RBP8.37□□□□□ -1.07
CD44-211ENST00000442151 CEBPZQ03701 1054 aaKnown RBP8.37□□□□□ -1.07
CD44-211ENST00000442151 DUOXA2Q1HG44 320 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 SLC5A9Q2M3M2 681 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 SLC39A12Q504Y0 691 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 ZC2HC1CQ53FD0 456 aaPredicted RBP8.37□□□□□ -1.07
CD44-211ENST00000442151 GPR158Q5T848 1215 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 RALGPS2Q86X27 583 aaPredicted RBP8.37□□□□□ -1.07
CD44-211ENST00000442151 HSCBQ8IWL3 235 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 GPD1LQ8N335 351 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 CSGALNACT2Q8N6G5 542 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 CELF5Q8N6W0 485 aaKnown RBP8.37□□□□□ -1.07
CD44-211ENST00000442151 FSIP1Q8NA03 581 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 FEZF2Q8TBJ5 459 aa8.37□□□□□ -1.07
CD44-211ENST00000442151 PGLYRP2Q96PD5 576 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms