RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 C2CD4DB7Z1M9 353 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 LOC730098B7Z3J9 87 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 STX10O60499 249 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 SOAT2O75908 522 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 STAU1O95793 577 aaKnown RBP19.98■□□□□ 0.79
SHH-203ENST00000435425 LMO2P25791 158 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 RAP1GAPP47736 663 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 CDH8P55286 799 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 ENPEPQ07075 957 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 RTL10Q7L3V2 364 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 MLKLQ8NB16 471 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 TAS1R2Q8TE23 839 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 SEPT5Q99719 369 aaPredicted RBP19.98■□□□□ 0.79
SHH-203ENST00000435425 ACBD6Q9BR61 282 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 SRRTQ9BXP5 876 aaKnown RBP19.98■□□□□ 0.79
SHH-203ENST00000435425 SMYD3Q9H7B4 428 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 TMEM8AQ9HCN3 771 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 DNMT3BQ9UBC3 853 aaKnown RBP19.98■□□□□ 0.79
SHH-203ENST00000435425 GTF3C4Q9UKN8 822 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 MAFFQ9ULX9 164 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 YIPF1Q9Y548 306 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 C5orf42Q9H799 3197 aa19.98■□□□□ 0.79
SHH-203ENST00000435425 GABRDO14764 452 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 ATP2C2O75185 946 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 MBD3O95983 291 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 WARSP23381 471 aaKnown RBP19.97■□□□□ 0.79
SHH-203ENST00000435425 PCSK1P29120 753 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 GBP2P32456 591 aaPredicted RBP19.97■□□□□ 0.79
SHH-203ENST00000435425 GNL1P36915 607 aaPredicted RBP19.97■□□□□ 0.79
SHH-203ENST00000435425 MXI1P50539 228 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 NLRP12P59046 1061 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 PSMC1P62191 440 aaKnown RBP19.97■□□□□ 0.79
SHH-203ENST00000435425 CCDC142Q17RM4 750 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 MGAT5BQ3V5L5 792 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 INTS6LQ5JSJ4 861 aaKnown RBP19.97■□□□□ 0.79
SHH-203ENST00000435425 KRT39Q6A163 491 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 GET4Q7L5D6 327 aaPredicted RBP19.97■□□□□ 0.79
SHH-203ENST00000435425 LIMS2Q7Z4I7 341 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 CREBRFQ8IUR6 639 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 ELMOD1Q8N336 334 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 TDRD5Q8NAT2 981 aaKnown RBP19.97■□□□□ 0.79
SHH-203ENST00000435425 SPATA18Q8TC71 538 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 SYT15Q9BQS2 421 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 CORO1BQ9BR76 489 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 RHOBTB2Q9BYZ6 727 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 IMPG2Q9BZV3 1241 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 METTL14Q9HCE5 456 aaKnown RBP19.97■□□□□ 0.79
SHH-203ENST00000435425 RWDD2AQ9UIY3 292 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 PCDHB5Q9Y5E4 795 aa19.97■□□□□ 0.79
SHH-203ENST00000435425 LRRN2O75325 713 aa19.96■□□□□ 0.79
SHH-203ENST00000435425 PAPLNO95428 1278 aa19.96■□□□□ 0.79
SHH-203ENST00000435425 PTPN2P17706 415 aa19.96■□□□□ 0.79
SHH-203ENST00000435425 FSHRP23945 695 aa19.96■□□□□ 0.79
SHH-203ENST00000435425 GTF2H1P32780 548 aa19.96■□□□□ 0.79
SHH-203ENST00000435425 ALDH1A3P47895 512 aa19.96■□□□□ 0.79
SHH-203ENST00000435425 DPCR1Q3MIW9 517 aa19.96■□□□□ 0.79
SHH-203ENST00000435425 FRMD5Q7Z6J6 570 aa19.96■□□□□ 0.79
SHH-203ENST00000435425 FAM200AQ8TCP9 573 aa19.96■□□□□ 0.79
SHH-203ENST00000435425 TAF4BQ92750 862 aa19.96■□□□□ 0.79
SHH-203ENST00000435425 ACSF2Q96CM8 615 aaPredicted RBP19.96■□□□□ 0.79
SHH-203ENST00000435425 ZNF512Q96ME7 567 aaPredicted RBP19.96■□□□□ 0.79
SHH-203ENST00000435425 VRTNQ9H8Y1 702 aa19.96■□□□□ 0.79
SHH-203ENST00000435425 NOTCH4Q99466 2003 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 MYBPHLA2RUH7 354 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 A8MXQ7 604 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 TACC1O75410 805 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 ASS1P00966 412 aaKnown RBP19.95■□□□□ 0.78
SHH-203ENST00000435425 P4HA1P13674 534 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 EPHB3P54753 998 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 TPD52L1Q16890 204 aaPredicted RBP19.95■□□□□ 0.78
SHH-203ENST00000435425 CBWD6Q4V339 395 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 PABPC1LQ4VXU2 614 aaKnown RBP19.95■□□□□ 0.78
SHH-203ENST00000435425 CBWD3Q5JTY5 395 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 CBWD5Q5RIA9 395 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 IQCEQ6IPM2 695 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 OTOP3Q7RTS5 596 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 RNF135Q8IUD6 432 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 HS6ST3Q8IZP7 471 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 CCDC150Q8NCX0 1101 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 SPPL2BQ8TCT7 592 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 SEMA4DQ92854 862 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 KHSRPQ92945 711 aaKnown RBP eCLIP19.95■□□□□ 0.78
SHH-203ENST00000435425 LPIN3Q9BQK8 851 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 SDCBP2Q9H190 292 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 CEP72Q9P209 647 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 CDH9Q9ULB4 789 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 NME7Q9Y5B8 376 aa19.95■□□□□ 0.78
SHH-203ENST00000435425 FGFR1OPO95684 399 aaKnown RBP19.94■□□□□ 0.78
SHH-203ENST00000435425 RHOP08100 348 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 TUFMP49411 452 aaKnown RBP19.94■□□□□ 0.78
SHH-203ENST00000435425 MCCD1P59942 119 aaPredicted RBP19.94■□□□□ 0.78
SHH-203ENST00000435425 NOP14P78316 857 aaKnown RBP19.94■□□□□ 0.78
SHH-203ENST00000435425 SMARCB1Q12824 385 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 PLD1Q13393 1074 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 NFE2Q16621 373 aaPredicted RBP19.94■□□□□ 0.78
SHH-203ENST00000435425 FOXR2Q6PJQ5 311 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 SPATA2LQ8IUW3 424 aaPredicted RBP19.94■□□□□ 0.78
SHH-203ENST00000435425 FBXL13Q8NEE6 735 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 GIPC2Q8TF65 315 aa19.94■□□□□ 0.78
SHH-203ENST00000435425 C2orf15Q8WU43 125 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms