RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 SPPL2BQ8TCT7 592 aa18.41■□□□□ 0.54
TRIM39-209ENST00000428728 FOXD4L4Q8WXT5 416 aaPredicted RBP18.41■□□□□ 0.54
TRIM39-209ENST00000428728 E2F7Q96AV8 911 aa18.41■□□□□ 0.54
TRIM39-209ENST00000428728 BORCS6Q96GS4 357 aa18.41■□□□□ 0.54
TRIM39-209ENST00000428728 GCNAQ96QF7 691 aa18.41■□□□□ 0.54
TRIM39-209ENST00000428728 TRPV5Q9NQA5 729 aa18.41■□□□□ 0.54
TRIM39-209ENST00000428728 AGAP1Q9UPQ3 857 aa18.41■□□□□ 0.54
TRIM39-209ENST00000428728 SPTBN4Q9H254 2564 aa18.41■□□□□ 0.54
TRIM39-209ENST00000428728 ARNTLO00327 626 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 PRAMEF12O95522 483 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 FGF19O95750 216 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 LDHAP00338 332 aaKnown RBP18.4■□□□□ 0.54
TRIM39-209ENST00000428728 KRT19P08727 400 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 CCNE1P24864 410 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 PNPLA4P41247 253 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 SOX9P48436 509 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 LMBRD2Q68DH5 695 aaPredicted RBP18.4■□□□□ 0.54
TRIM39-209ENST00000428728 KIAA2013Q8IYS2 634 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 ZNF687Q8N1G0 1237 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 LINC00301Q8NCQ3 95 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 STKLD1Q8NE28 680 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 GLIS3Q8NEA6 775 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 C2orf15Q8WU43 125 aaKnown RBP18.4■□□□□ 0.54
TRIM39-209ENST00000428728 HPS3Q969F9 1004 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 ZFYVE19Q96K21 471 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 MTMR12Q9C0I1 747 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 CHRDQ9H2X0 955 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 PDE11AQ9HCR9 933 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 TFIP11Q9UBB9 837 aaKnown RBP18.4■□□□□ 0.54
TRIM39-209ENST00000428728 L1RE1Q9UN81 338 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 OTOGLQ3ZCN5 2332 aa18.4■□□□□ 0.54
TRIM39-209ENST00000428728 EP300Q09472 2414 aaPredicted RBP18.4■□□□□ 0.54
TRIM39-209ENST00000428728 SPTLC2O15270 562 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 CHADO15335 359 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 EXTL3O43909 919 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 TMEM191BP0C7N4 346 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 HAPLN1P10915 354 aaPredicted RBP18.39■□□□□ 0.53
TRIM39-209ENST00000428728 CDC25CP30307 473 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 KPNA1P52294 538 aaPredicted RBP18.39■□□□□ 0.53
TRIM39-209ENST00000428728 TSPY1Q01534 308 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 SCARA3Q6AZY7 606 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 DCP1BQ8IZD4 617 aaKnown RBP18.39■□□□□ 0.53
TRIM39-209ENST00000428728 PDCL2Q8N4E4 241 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 TTC8Q8TAM2 541 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 CACTINQ8WUQ7 758 aaKnown RBP18.39■□□□□ 0.53
TRIM39-209ENST00000428728 IL21Q9HBE4 155 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 PRMT8Q9NR22 394 aaPredicted RBP18.39■□□□□ 0.53
TRIM39-209ENST00000428728 TMLHEQ9NVH6 421 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 PCDHB5Q9Y5E4 795 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 PCDHGA2Q9Y5H1 932 aa18.39■□□□□ 0.53
TRIM39-209ENST00000428728 ATG2BQ96BY7 2078 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 HUS1O60921 280 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 ACAT1P24752 427 aaKnown RBP18.38■□□□□ 0.53
TRIM39-209ENST00000428728 ID4P47928 161 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 GPR15P49685 360 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 ASIC1P78348 528 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 FCHO2Q0JRZ9 810 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 SMARCB1Q12824 385 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 GPD1LQ8N335 351 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 DCLK2Q8N568 766 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 CSGALNACT2Q8N6G5 542 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 SUMF1Q8NBK3 374 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 ATRIPQ8WXE1 791 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 RUBCNQ92622 972 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 DHX58Q96C10 678 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 ZNF396Q96N95 335 aaPredicted RBP18.38■□□□□ 0.53
TRIM39-209ENST00000428728 LRRC3BQ96PB8 259 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 PI4K2AQ9BTU6 479 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 SMG9Q9H0W8 520 aaKnown RBP18.38■□□□□ 0.53
TRIM39-209ENST00000428728 TNMDQ9H2S6 317 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 TASP1Q9H6P5 420 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 TMEM206Q9H813 350 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 LMAN1LQ9HAT1 526 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 DDX43Q9NXZ2 648 aaKnown RBP18.38■□□□□ 0.53
TRIM39-209ENST00000428728 ITGA11Q9UKX5 1188 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 RALGAPA1Q6GYQ0 2036 aa18.38■□□□□ 0.53
TRIM39-209ENST00000428728 PRPF40AO75400 957 aaKnown RBP18.37■□□□□ 0.53
TRIM39-209ENST00000428728 E2F4Q16254 413 aa18.37■□□□□ 0.53
TRIM39-209ENST00000428728 CCDC142Q17RM4 750 aa18.37■□□□□ 0.53
TRIM39-209ENST00000428728 FOXD4L6Q3SYB3 417 aaPredicted RBP18.37■□□□□ 0.53
TRIM39-209ENST00000428728 SDHAF4Q5VUM1 108 aa18.37■□□□□ 0.53
TRIM39-209ENST00000428728 FOXD4L3Q6VB84 417 aaPredicted RBP18.37■□□□□ 0.53
TRIM39-209ENST00000428728 STXBP4Q6ZWJ1 553 aa18.37■□□□□ 0.53
TRIM39-209ENST00000428728 LRRC52Q8N7C0 313 aa18.37■□□□□ 0.53
TRIM39-209ENST00000428728 ZSCAN32Q9NX65 697 aa18.37■□□□□ 0.53
TRIM39-209ENST00000428728 GTSE1Q9NYZ3 720 aa18.37■□□□□ 0.53
TRIM39-209ENST00000428728 SIX4Q9UIU6 781 aa18.37■□□□□ 0.53
TRIM39-209ENST00000428728 MAGED2Q9UNF1 606 aaPredicted RBP18.37■□□□□ 0.53
TRIM39-209ENST00000428728 SNX9Q9Y5X1 595 aa18.37■□□□□ 0.53
TRIM39-209ENST00000428728 PTPRJQ12913 1337 aa18.37■□□□□ 0.53
TRIM39-209ENST00000428728 MYO16Q9Y6X6 1858 aa18.37■□□□□ 0.53
TRIM39-209ENST00000428728 HCRTO43612 131 aa18.36■□□□□ 0.53
TRIM39-209ENST00000428728 PPP6R2O75170 966 aa18.36■□□□□ 0.53
TRIM39-209ENST00000428728 MYL7Q01449 175 aa18.36■□□□□ 0.53
TRIM39-209ENST00000428728 TNK2Q07912 1038 aa18.36■□□□□ 0.53
TRIM39-209ENST00000428728 ARHGAP29Q52LW3 1261 aa18.36■□□□□ 0.53
TRIM39-209ENST00000428728 OSTM1Q86WC4 334 aa18.36■□□□□ 0.53
TRIM39-209ENST00000428728 ADGRF2Q8IZF7 708 aa18.36■□□□□ 0.53
TRIM39-209ENST00000428728 ZBTB44Q8NCP5 570 aa18.36■□□□□ 0.53
TRIM39-209ENST00000428728 CXorf38Q8TB03 319 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms