RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 OR5M3Q8NGP4 307 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 PLBD2Q8NHP8 589 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 DNAJB8Q8NHS0 232 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 KIAA1524Q8TCG1 905 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 AZIN2Q96A70 460 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 KLHDC7BQ96G42 594 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 REXO5Q96IC2 774 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 PIGSQ96S52 555 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ACOX2Q99424 681 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ELF4Q99607 663 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 FERMT1Q9BQL6 677 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 PI4K2AQ9BTU6 479 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 R3HDMLQ9H3Y0 253 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ANTXR1Q9H6X2 564 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CNOT10Q9H9A5 744 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 FZD10Q9ULW2 581 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 TNNQ9UQP3 1299 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 UTP18Q9Y5J1 556 aaKnown RBP eCLIP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ERVK-7P63135 1459 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 BCL9O00512 1426 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 UNC13CQ8NB66 2214 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 PTPRCP08575 1304 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 RASA4BC9J798 803 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CHL1O00533 1208 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SCAMP1O15126 338 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 RASA4O43374 803 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 STX6O43752 255 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 DNAJB6O75190 326 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 MT-CO3P00414 261 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 IQCF3P0C7M6 154 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ERVK-10P10266 1014 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 HSPD1P10809 573 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 RALAP11233 206 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SSTR4P31391 388 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ZNF165P49910 485 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SMTNP53814 917 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 KDSRQ06136 332 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 BMP2KLQ5H9B9 411 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 LDLRAD1Q5T700 205 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 TAF8Q7Z7C8 310 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 OR14C36Q8NHC7 312 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 GRIN3AQ8TCU5 1115 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 MORC4Q8TE76 937 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 CD101Q93033 1021 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SDCCAG3Q96C92 435 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ARHGEF26Q96DR7 871 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 FNBP1Q96RU3 617 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC38A3Q99624 504 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ALOXE3Q9BYJ1 711 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 TWSG1Q9GZX9 223 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 ARHGAP28Q9P2N2 729 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 POLKQ9UBT6 870 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 TMEM59LQ9UK28 342 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 PCDHB2Q9Y5E7 798 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 PCDHGA10Q9Y5H3 936 aa2.94□□□□□ -1.94
CCDC88A-205ENST00000426576 MAP3K4Q9Y6R4 1608 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 HYKKA2RU49 373 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 NFIBO00712 420 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 MUSKO15146 869 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 MAGEB2O15479 319 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 CYP27B1O15528 508 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 DYRK3O43781 588 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 PRPF40AO75400 957 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 RNASEH2AO75792 299 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 AKAP3O75969 853 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 F9P00740 461 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 EPHX1P07099 455 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 HSPA4P34932 840 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 PDE1AP54750 535 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 EPHB1P54762 984 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 ACTN3Q08043 901 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 ADGRE1Q14246 886 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 PDGFRLQ15198 375 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 LDLRAP1Q5SW96 308 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 FNBP1LQ5T0N5 605 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 DGKHQ86XP1 1220 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 CMTR2Q8IYT2 770 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 ZNF557Q8N988 423 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 JAKMIP2Q96AA8 810 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 TRIM5Q9C035 493 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 CLPBQ9H078 707 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 PNPLA8Q9NP80 782 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 DNAJB12Q9NXW2 375 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 STOML1Q9UBI4 398 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 MGAM2Q2M2H8 2515 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 PIK3C2AO00443 1686 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 SPTBN5Q9NRC6 3674 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 FLT1P17948 1338 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 CCDC194A0A1B0GVG4 234 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 CCL21O00585 134 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 ARHGAP33O14559 1287 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 SURF6O75683 361 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 TMEM63AO94886 807 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 KRT7P08729 469 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM87AP0C7U9 286 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 KRT13P13646 458 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 POLR2BP30876 1174 aaKnown RBP2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 CTSWP56202 376 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 HDAC4P56524 1084 aa2.93□□□□□ -1.94
CCDC88A-205ENST00000426576 PTK7Q13308 1070 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms