RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 TIGD1Q96MW7 591 aa15.9■□□□□ 0.14
LIMS4-201ENST00000413601 MMS19Q96T76 1030 aa15.9■□□□□ 0.14
LIMS4-201ENST00000413601 SEPT5Q99719 369 aaPredicted RBP15.9■□□□□ 0.14
LIMS4-201ENST00000413601 ACBD6Q9BR61 282 aa15.9■□□□□ 0.14
LIMS4-201ENST00000413601 ASAH2Q9NR71 780 aa15.9■□□□□ 0.14
LIMS4-201ENST00000413601 TMLHEQ9NVH6 421 aa15.9■□□□□ 0.14
LIMS4-201ENST00000413601 ABI2Q9NYB9 513 aaPredicted RBP15.9■□□□□ 0.14
LIMS4-201ENST00000413601 HSFX1Q9UBD0 423 aa15.9■□□□□ 0.14
LIMS4-201ENST00000413601 FRMD4BQ9Y2L6 1034 aa15.9■□□□□ 0.14
LIMS4-201ENST00000413601 NUP210Q8TEM1 1887 aaPredicted RBP15.89■□□□□ 0.13
LIMS4-201ENST00000413601 ZNF197O14709 1029 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 GABRDO14764 452 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 PHACTR2O75167 634 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 GJA1P17302 382 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 NR2F2P24468 414 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 ANP32AP39687 249 aaKnown RBP15.89■□□□□ 0.13
LIMS4-201ENST00000413601 LHX1P48742 406 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 TUFMP49411 452 aaKnown RBP15.89■□□□□ 0.13
LIMS4-201ENST00000413601 EPHA5P54756 1037 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 MYL6P60660 151 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 CLDN10P78369 228 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 SMARCB1Q12824 385 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 BIRC3Q13489 604 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 TRPC3Q13507 836 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 MGAT5BQ3V5L5 792 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 DPH6Q7L8W6 267 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 LIMS2Q7Z4I7 341 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 FBXL6Q8N531 539 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 SPATA18Q8TC71 538 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 SPPL2BQ8TCT7 592 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 C2orf15Q8WU43 125 aaKnown RBP15.89■□□□□ 0.13
LIMS4-201ENST00000413601 KBTBD7Q8WVZ9 684 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 GSDMAQ96QA5 445 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 LRRC3Q9BY71 257 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 RMND1Q9NWS8 449 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 GDE1Q9NZC3 331 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 CHMP5Q9NZZ3 219 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 PCDHB5Q9Y5E4 795 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 PCDHA5Q9Y5H7 936 aa15.89■□□□□ 0.13
LIMS4-201ENST00000413601 MOSPD3O75425 235 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 SMC2O95347 1197 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 C4BPAP04003 597 aaKnown RBP15.88■□□□□ 0.13
LIMS4-201ENST00000413601 CFHP08603 1231 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 HAPLN1P10915 354 aaPredicted RBP15.88■□□□□ 0.13
LIMS4-201ENST00000413601 ATF6P18850 670 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 LMO2P25791 158 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 PRCPP42785 496 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 AP3M2P53677 418 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 NFIL3Q16649 462 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 CCDC142Q17RM4 750 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 WDR72Q3MJ13 1102 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 ZCWPW2Q504Y3 356 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 INTS6LQ5JSJ4 861 aaKnown RBP15.88■□□□□ 0.13
LIMS4-201ENST00000413601 ZNF658Q5TYW1 1059 aaPredicted RBP15.88■□□□□ 0.13
LIMS4-201ENST00000413601 TDRD10Q5VZ19 366 aaKnown RBP15.88■□□□□ 0.13
LIMS4-201ENST00000413601 MTSS1LQ765P7 747 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 DNAJB7Q7Z6W7 309 aaPredicted RBP15.88■□□□□ 0.13
LIMS4-201ENST00000413601 LEMD2Q8NC56 503 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 FAM200AQ8TCP9 573 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 TMC2Q8TDI7 906 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 SMARCE1Q969G3 411 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 KXD1Q9BQD3 176 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 LPIN3Q9BQK8 851 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 PI4K2AQ9BTU6 479 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 HOOK1Q9UJC3 728 aaKnown RBP15.88■□□□□ 0.13
LIMS4-201ENST00000413601 GTF3C4Q9UKN8 822 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 FBXL21Q9UKT6 434 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 HCN4Q9Y3Q4 1203 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 ASB3Q9Y575 518 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 ZNF318Q5VUA4 2279 aa15.88■□□□□ 0.13
LIMS4-201ENST00000413601 MYH10P35580 1976 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 KINO60870 393 aaKnown RBP15.87■□□□□ 0.13
LIMS4-201ENST00000413601 ATP2C2O75185 946 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 AKAP3O75969 853 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 MICAL2O94851 1124 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 VNN1O95497 513 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 SRFP11831 508 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 WARSP23381 471 aaKnown RBP15.87■□□□□ 0.13
LIMS4-201ENST00000413601 RPL13P26373 211 aaKnown RBP15.87■□□□□ 0.13
LIMS4-201ENST00000413601 PCSK1P29120 753 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 TNNC1P63316 161 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 ADAM9Q13443 819 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 TEAD2Q15562 447 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 NFE2Q16621 373 aaPredicted RBP15.87■□□□□ 0.13
LIMS4-201ENST00000413601 TMC8Q8IU68 726 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 SUGP1Q8IWZ8 645 aaKnown RBP15.87■□□□□ 0.13
LIMS4-201ENST00000413601 SPATA20Q8TB22 786 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 SHKBP1Q8TBC3 707 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 GPR152Q8TDT2 470 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 GIPC2Q8TF65 315 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 PSMG2Q969U7 264 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 ELMO3Q96BJ8 720 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 ZSWIM3Q96MP5 696 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 PKMYT1Q99640 499 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 MRPL45Q9BRJ2 306 aaKnown RBP15.87■□□□□ 0.13
LIMS4-201ENST00000413601 XYLT2Q9H1B5 865 aa15.87■□□□□ 0.13
LIMS4-201ENST00000413601 ZNF334Q9HCZ1 680 aaPredicted RBP15.87■□□□□ 0.13
LIMS4-201ENST00000413601 NXF1Q9UBU9 619 aaKnown RBP15.87■□□□□ 0.13
LIMS4-201ENST00000413601 ANAPC1Q9H1A4 1944 aa15.86■□□□□ 0.13
LIMS4-201ENST00000413601 A0A1W2PRU2 124 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms