RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 DDX20Q9UHI6 824 aaKnown RBP22.82■■□□□ 1.24
TRIM54-202ENST00000380075 MAGEB2O15479 319 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 C22orf31O95567 290 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 ITIH2P19823 946 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 LSP1P33241 339 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 PHKA2P46019 1235 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 CAV1Q03135 178 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 KRT17Q04695 432 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 TMEM132AQ24JP5 1023 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 FOXR1Q6PIV2 292 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 IFNLR1Q8IU57 520 aaPredicted RBP22.81■■□□□ 1.24
TRIM54-202ENST00000380075 COPS5Q92905 334 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 TMEM109Q9BVC6 243 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 RSPH14Q9UHP6 348 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 KCNJ1P48048 391 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 CDR1P51861 262 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 KLF1Q13351 362 aaPredicted RBP22.81■■□□□ 1.24
TRIM54-202ENST00000380075 C2CD6Q53TS8 623 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 LRRC38Q5VT99 294 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 LHX8Q68G74 356 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 SRLQ86TD4 932 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 ATL2Q8NHH9 583 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 C1orf54Q8WWF1 131 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 DEFB118Q96PH6 123 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 FAM107BQ9H098 131 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 XYLT2Q9H1B5 865 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 EPN3Q9H201 632 aa22.81■■□□□ 1.24
TRIM54-202ENST00000380075 RPF1Q9H9Y2 349 aaKnown RBP22.81■■□□□ 1.24
TRIM54-202ENST00000380075 TMEM191CA6NGB0 347 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 PPP2R2AP63151 447 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 BYSLQ13895 437 aaKnown RBP22.8■■□□□ 1.24
TRIM54-202ENST00000380075 CCNG2Q16589 344 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 KYAT1Q16773 422 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 DUSP28Q4G0W2 176 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 LLGL2Q6P1M3 1020 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 PHLDB2Q86SQ0 1253 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 THNSL1Q8IYQ7 743 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 PGM2Q96G03 612 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 CDT1Q9H211 546 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 GNEQ9Y223 722 aaKnown RBP22.8■■□□□ 1.24
TRIM54-202ENST00000380075 COL1A2P08123 1366 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 ASPAP45381 313 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 CLCN3P51790 818 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 ARHGAP1Q07960 439 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 ODF2Q5BJF6 829 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 TRMT10CQ7L0Y3 403 aaKnown RBP22.8■■□□□ 1.24
TRIM54-202ENST00000380075 CCDC50Q8IVM0 306 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 TRAPPC12Q8WVT3 735 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 TLCD1Q96CP7 247 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 RBM41Q96IZ5 413 aaKnown RBP22.8■■□□□ 1.24
TRIM54-202ENST00000380075 OSBPL8Q9BZF1 889 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 CNOT10Q9H9A5 744 aaKnown RBP22.8■■□□□ 1.24
TRIM54-202ENST00000380075 BCCIPQ9P287 314 aaKnown RBP eCLIP22.8■■□□□ 1.24
TRIM54-202ENST00000380075 SLC12A6Q9UHW9 1150 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 STRIP2Q9ULQ0 834 aa22.8■■□□□ 1.24
TRIM54-202ENST00000380075 NOVA2Q9UNW9 492 aaKnown RBP22.8■■□□□ 1.24
TRIM54-202ENST00000380075 TCRBV5S1A1TA0A578 114 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 EBAG9O00559 213 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 MED7O43513 233 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 GH1P01241 217 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 MCF2P10911 925 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 CD58P19256 250 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 HPDP32754 393 aaPredicted RBP22.79■■□□□ 1.24
TRIM54-202ENST00000380075 TAS2R40P59535 323 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 GUCY1A3Q02108 690 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 ADCY2Q08462 1091 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 DNAJC24Q6P3W2 148 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 RCOR2Q8IZ40 523 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 BBOF1Q8ND07 529 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 EMID1Q96A84 441 aaPredicted RBP22.79■■□□□ 1.24
TRIM54-202ENST00000380075 SNF8Q96H20 258 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 CHST7Q9NS84 486 aa22.79■■□□□ 1.24
TRIM54-202ENST00000380075 RRP15Q9Y3B9 282 aaKnown RBP22.79■■□□□ 1.24
TRIM54-202ENST00000380075 RARBP10826 455 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 RALAP11233 206 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 BRD2P25440 801 aaKnown RBP22.78■■□□□ 1.24
TRIM54-202ENST00000380075 IRX5P78411 483 aaPredicted RBP22.78■■□□□ 1.24
TRIM54-202ENST00000380075 PTGISQ16647 500 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 RNF25Q96BH1 459 aaPredicted RBP22.78■■□□□ 1.24
TRIM54-202ENST00000380075 ASIC3Q9UHC3 531 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 DYNC1LI2O43237 492 aaPredicted RBP22.78■■□□□ 1.24
TRIM54-202ENST00000380075 DUSP11O75319 330 aaKnown RBP22.78■■□□□ 1.24
TRIM54-202ENST00000380075 LGALS2P05162 132 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 COPS2P61201 443 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 LMNB2Q03252 620 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 PIGHQ14442 188 aaPredicted RBP22.78■■□□□ 1.24
TRIM54-202ENST00000380075 C6orf118Q5T5N4 469 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 EEF1DP3Q658K8 133 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 TTC19Q6DKK2 380 aaPredicted RBP22.78■■□□□ 1.24
TRIM54-202ENST00000380075 SPATS2Q86XZ4 545 aaKnown RBP22.78■■□□□ 1.24
TRIM54-202ENST00000380075 C3orf20Q8ND61 904 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 PPTC7Q8NI37 304 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 STMN4Q9H169 189 aaPredicted RBP22.78■■□□□ 1.24
TRIM54-202ENST00000380075 LHX5Q9H2C1 402 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 RNPEPQ9H4A4 650 aa22.78■■□□□ 1.24
TRIM54-202ENST00000380075 NDUFAB1O14561 156 aa22.77■■□□□ 1.24
TRIM54-202ENST00000380075 B4GALT5O43286 388 aa22.77■■□□□ 1.24
TRIM54-202ENST00000380075 PGK1P00558 417 aa22.77■■□□□ 1.24
TRIM54-202ENST00000380075 PAEPP09466 180 aa22.77■■□□□ 1.24
TRIM54-202ENST00000380075 POLR2BP30876 1174 aaKnown RBP22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms