RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 VCXQ9H320 206 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 RABGEF1Q9UJ41 708 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 GSC2O15499 205 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 GNAT1P11488 350 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 OASLQ15646 514 aaKnown RBP22.26■■□□□ 1.15
UPF3A-202ENST00000375299 SNX30Q5VWJ9 437 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 ZNF516Q92618 1163 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 IP6K2Q9UHH9 426 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 CLUHO75153 1309 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 TM9SF1O15321 606 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 MAP3K13O43283 966 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 BANF1O75531 89 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 SNUPNO95149 360 aaKnown RBP22.26■■□□□ 1.15
UPF3A-202ENST00000375299 PAPOLAP51003 745 aaKnown RBP22.26■■□□□ 1.15
UPF3A-202ENST00000375299 VCPP55072 806 aaKnown RBP22.26■■□□□ 1.15
UPF3A-202ENST00000375299 MCL1Q07820 350 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 EFTUD2Q15029 972 aaKnown RBP eCLIP22.26■■□□□ 1.152e-6■■■□□ 15.3
UPF3A-202ENST00000375299 GNPTABQ3T906 1256 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 WDR44Q5JSH3 913 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 ABRAQ8N0Z2 381 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 TCP10LQ8TDR4 215 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 NSL1Q96IY1 281 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 SENP7Q9BQF6 1050 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 TRIM55Q9BYV6 548 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.26■■□□□ 1.151e-6■■■□□ 14.9
UPF3A-202ENST00000375299 PCDH9Q9HC56 1237 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 DLGAP2Q9P1A6 1054 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 HEY2Q9UBP5 337 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 UBIAD1Q9Y5Z9 338 aa22.26■■□□□ 1.15
UPF3A-202ENST00000375299 COL2A1P02458 1487 aaPredicted RBP22.26■■□□□ 1.15
UPF3A-202ENST00000375299 CFAP69A5D8W1 941 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 TCF4P15884 667 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 PHBP35232 272 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 OCRLQ01968 901 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 RBBP5Q15291 538 aaKnown RBP22.25■■□□□ 1.15
UPF3A-202ENST00000375299 ACSBG2Q5FVE4 666 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 CC2D2BQ6DHV5 1058 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 ADGRD1Q6QNK2 874 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 FAM160B2Q86V87 743 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 VPS11Q9H270 941 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 PAPOLBQ9NRJ5 636 aaKnown RBP22.25■■□□□ 1.15
UPF3A-202ENST00000375299 A0A0G2JND7 137 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 KRT36O76013 467 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 ACO1P21399 889 aaKnown RBP22.25■■□□□ 1.15
UPF3A-202ENST00000375299 GLRA2P23416 452 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 RFC5P40937 340 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 PIK3CAP42336 1068 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 PSMC5P62195 406 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 KPNB1Q14974 876 aaKnown RBP22.25■■□□□ 1.15
UPF3A-202ENST00000375299 HIF1AQ16665 826 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 WDR72Q3MJ13 1102 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 SPOCD1Q6ZMY3 1216 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 MZB1Q8WU39 189 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 UCMAQ8WVF2 138 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 NRG4Q8WWG1 115 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 BSNDQ8WZ55 320 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 FAM213AQ9BRX8 229 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 MANSC1Q9H8J5 431 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 ANKEF1Q9NU02 776 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 PARVAQ9NVD7 372 aa22.25■■□□□ 1.15
UPF3A-202ENST00000375299 GYG2O15488 501 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 SKIP12755 728 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 GNA15P30679 374 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 SSTR3P32745 418 aaPredicted RBP22.24■■□□□ 1.15
UPF3A-202ENST00000375299 ARFIP2P53365 341 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 SLC34A1Q06495 639 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 C1QBPQ07021 282 aaKnown RBP22.24■■□□□ 1.15
UPF3A-202ENST00000375299 TFDP1Q14186 410 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 BRDTQ58F21 947 aaPredicted RBP22.24■■□□□ 1.15
UPF3A-202ENST00000375299 CWF19L1Q69YN2 538 aaKnown RBP22.24■■□□□ 1.15
UPF3A-202ENST00000375299 MFN1Q8IWA4 741 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 SCG3Q8WXD2 468 aaKnown RBP22.24■■□□□ 1.15
UPF3A-202ENST00000375299 PAFAH2Q99487 392 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 DHRS4Q9BTZ2 278 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 TBC1D22BQ9NU19 505 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 GOLGA8SH3BPF8 625 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 GOLGA8MH3BSY2 632 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 PLA2G6O60733 806 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 DNAJC6O75061 913 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 PSMG1O95456 288 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 HLA-DRAP01903 254 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 ITGAVP06756 1048 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 GARTP22102 1010 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 MTMR1Q13613 665 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 RCN2Q14257 317 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 LMBRD2Q68DH5 695 aaPredicted RBP22.24■■□□□ 1.15
UPF3A-202ENST00000375299 STYK1Q6J9G0 422 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 LRRC74BQ6ZQY2 392 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 BANPQ8N9N5 519 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 ATP11CQ8NB49 1132 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 NKD2Q969F2 451 aaPredicted RBP22.24■■□□□ 1.15
UPF3A-202ENST00000375299 SKA1Q96BD8 255 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 ALKBH8Q96BT7 664 aaKnown RBP22.24■■□□□ 1.15
UPF3A-202ENST00000375299 HAUS1Q96CS2 278 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 FBXO28Q9NVF7 368 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 SLC17A7Q9P2U7 560 aa22.24■■□□□ 1.15
UPF3A-202ENST00000375299 HERC5Q9UII4 1024 aaKnown RBP22.24■■□□□ 1.15
UPF3A-202ENST00000375299 FARP1Q9Y4F1 1045 aaPredicted RBP22.24■■□□□ 1.15
UPF3A-202ENST00000375299 GOLGB1Q14789 3259 aaKnown RBP22.23■■□□□ 1.15
UPF3A-202ENST00000375299 H0YIN7 160 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms