RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 KLC2Q9H0B6 622 aa16.52■□□□□ 0.24
RTN3-205ENST00000356000 Q9H521 79 aa16.52■□□□□ 0.24
RTN3-205ENST00000356000 LIN28AQ9H9Z2 209 aaKnown RBP16.52■□□□□ 0.24
RTN3-205ENST00000356000 PIH1D3Q9NQM4 214 aaKnown RBP16.52■□□□□ 0.24
RTN3-205ENST00000356000 RABL2AQ9UBK7 228 aaPredicted RBP16.52■□□□□ 0.24
RTN3-205ENST00000356000 PCDHB2Q9Y5E7 798 aa16.52■□□□□ 0.24
RTN3-205ENST00000356000 IGSF9BQ9UPX0 1349 aa16.52■□□□□ 0.24
RTN3-205ENST00000356000 CAPN14A8MX76 684 aa16.52■□□□□ 0.23
RTN3-205ENST00000356000 MIF4GDA9UHW6 222 aaKnown RBP16.52■□□□□ 0.23
RTN3-205ENST00000356000 RSPH10B2B2RC85 870 aa16.52■□□□□ 0.23
RTN3-205ENST00000356000 PIK3CDO00329 1044 aa16.52■□□□□ 0.23
RTN3-205ENST00000356000 RSPH10BP0C881 870 aa16.52■□□□□ 0.23
RTN3-205ENST00000356000 THRAP10827 490 aa16.52■□□□□ 0.23
RTN3-205ENST00000356000 SCG2P13521 617 aa16.52■□□□□ 0.23
RTN3-205ENST00000356000 MECOMQ03112 1051 aa16.52■□□□□ 0.23
RTN3-205ENST00000356000 E2F2Q14209 437 aa16.52■□□□□ 0.23
RTN3-205ENST00000356000 LVRNQ6Q4G3 990 aa16.52■□□□□ 0.23
RTN3-205ENST00000356000 PAOXQ6QHF9 649 aa16.52■□□□□ 0.23
RTN3-205ENST00000356000 PTCD2Q8WV60 388 aaKnown RBP16.52■□□□□ 0.23
RTN3-205ENST00000356000 POP1Q99575 1024 aaKnown RBP16.52■□□□□ 0.23
RTN3-205ENST00000356000 PRPF18Q99633 342 aaKnown RBP16.52■□□□□ 0.23
RTN3-205ENST00000356000 KIAA1586Q9HCI6 787 aa16.52■□□□□ 0.23
RTN3-205ENST00000356000 FAM205AQ6ZU69 1335 aa16.52■□□□□ 0.23
RTN3-205ENST00000356000 MYMKA6NI61 221 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 ADRA2BP18089 450 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 GSSP48637 474 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 TRIP10Q15642 601 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 PHKG1Q16816 387 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 ZNF276Q8N554 614 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 GLIS3Q8NEA6 775 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 SLC30A5Q8TAD4 765 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 OXNAD1Q96HP4 312 aaPredicted RBP16.51■□□□□ 0.23
RTN3-205ENST00000356000 UNKQ9C0B0 810 aaKnown RBP16.51■□□□□ 0.23
RTN3-205ENST00000356000 KANSL2Q9H9L4 492 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 PCDHGB4Q9UN71 923 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 PCDHGB5Q9Y5G0 923 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 ARFGEF2Q9Y6D5 1785 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 GSG1L2A8MUP6 293 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 TMEM114B3SHH9 223 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 TGDSO95455 350 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 C6orf222P0C671 652 aaPredicted RBP16.51■□□□□ 0.23
RTN3-205ENST00000356000 GCAP28676 217 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 SIX1Q15475 284 aaPredicted RBP16.51■□□□□ 0.23
RTN3-205ENST00000356000 ZNF829Q3KNS6 432 aaPredicted RBP16.51■□□□□ 0.23
RTN3-205ENST00000356000 SV2BQ7L1I2 683 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 TDRPQ86YL5 185 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 BLIDQ8IZY5 108 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 TYW1Q9NV66 732 aaKnown RBP16.51■□□□□ 0.23
RTN3-205ENST00000356000 MTUS1Q9ULD2 1270 aa16.51■□□□□ 0.23
RTN3-205ENST00000356000 CSDE1O75534 798 aaKnown RBP16.5■□□□□ 0.23
RTN3-205ENST00000356000 IVDP26440 423 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 CALML3P27482 149 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 CAV1Q03135 178 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 EFTUD2Q15029 972 aaKnown RBP eCLIP16.5■□□□□ 0.233e-9■■■■□ 23.3
RTN3-205ENST00000356000 CATIPQ7Z7H3 387 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 KSR1Q8IVT5 923 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 C4orf33Q8N1A6 199 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 UBL4BQ8N7F7 174 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 GSTCDQ8NEC7 633 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 OLIG1Q8TAK6 271 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 SNF8Q96H20 258 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 CTRCQ99895 268 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 CEP44Q9C0F1 390 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 NMUR2Q9GZQ4 415 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 GID8Q9NWU2 228 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 ARMCX1Q9P291 453 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 RAB26Q9ULW5 256 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 SIPA1L3O60292 1781 aaPredicted RBP16.5■□□□□ 0.23
RTN3-205ENST00000356000 TCRBV7S2A1N4TA0A589 114 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 PFDN6O15212 129 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 CYTH3O43739 400 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 ABHD2P08910 425 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 DLDP09622 509 aaKnown RBP16.5■□□□□ 0.23
RTN3-205ENST00000356000 SLC9A1P19634 815 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 TUBA4AP68366 448 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 NR1D2Q14995 579 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 PKN2Q16513 984 aaKnown RBP16.5■□□□□ 0.23
RTN3-205ENST00000356000 EFHC1Q5JVL4 640 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 OGFRL1Q5TC84 451 aaPredicted RBP16.5■□□□□ 0.23
RTN3-205ENST00000356000 ISLR2Q6UXK2 745 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 RELL1Q8IUW5 271 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 LRRC49Q8IUZ0 686 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 TTC39CQ8N584 583 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 LNX1Q8TBB1 728 aaPredicted RBP16.5■□□□□ 0.23
RTN3-205ENST00000356000 PLEKHA8Q96JA3 519 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 RBM15Q96T37 977 aaKnown RBP eCLIP16.5■□□□□ 0.234e-7■■■□□ 16.7
RTN3-205ENST00000356000 RNF41Q9H4P4 317 aaPredicted RBP16.5■□□□□ 0.23
RTN3-205ENST00000356000 RETREG1Q9H6L5 497 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 MAN1C1Q9NR34 630 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 TMOD2Q9NZR1 351 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 IGSF9Q9P2J2 1179 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 DTNAQ9Y4J8 743 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 ALG6Q9Y672 507 aa16.5■□□□□ 0.23
RTN3-205ENST00000356000 ANKRD34BA5PLL1 514 aa16.49■□□□□ 0.23
RTN3-205ENST00000356000 POTECB2RU33 542 aa16.49■□□□□ 0.23
RTN3-205ENST00000356000 ITGA8P53708 1063 aa16.49■□□□□ 0.23
RTN3-205ENST00000356000 KRT17Q04695 432 aa16.49■□□□□ 0.23
RTN3-205ENST00000356000 KCNH2Q12809 1159 aa16.49■□□□□ 0.23
RTN3-205ENST00000356000 LRRC41Q15345 812 aa16.49■□□□□ 0.23
RTN3-205ENST00000356000 PUS10Q3MIT2 529 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms