RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 CPNE8Q86YQ8 564 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 CCDC50Q8IVM0 306 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 MAGEC3Q8TD91 643 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 ELAC2Q9BQ52 826 aaKnown RBP9.13□□□□□ -0.95
TRIM55-204ENST00000353317 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.13□□□□□ -0.95
TRIM55-204ENST00000353317 PTPN22Q9Y2R2 807 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 COL1A2P08123 1366 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 MAGEB2O15479 319 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 CLDN3O15551 220 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 ATMINO43313 823 aaPredicted RBP9.13□□□□□ -0.95
TRIM55-204ENST00000353317 ADAMTS4O75173 837 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 DUSP11O75319 330 aaKnown RBP9.13□□□□□ -0.95
TRIM55-204ENST00000353317 PRKAR2AP13861 404 aaKnown RBP9.13□□□□□ -0.95
TRIM55-204ENST00000353317 KCNJ1P48048 391 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 EFNA5P52803 228 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 CLDN10P78369 228 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 AUHQ13825 339 aaKnown RBP9.13□□□□□ -0.95
TRIM55-204ENST00000353317 MESDQ14696 234 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 GNASQ5JWF2 1037 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 TSHZ1Q6ZSZ6 1077 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 FMNL3Q8IVF7 1028 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 DNAJB3Q8WWF6 145 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 KREMEN1Q96MU8 473 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 TACO1Q9BSH4 297 aaKnown RBP9.13□□□□□ -0.95
TRIM55-204ENST00000353317 CCDC134Q9H6E4 229 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 MTRF1LQ9UGC7 380 aaKnown RBP9.13□□□□□ -0.95
TRIM55-204ENST00000353317 GINS2Q9Y248 185 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 Q9Y3F1 56 aa9.13□□□□□ -0.95
TRIM55-204ENST00000353317 THSD7BQ9C0I4 1608 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 H0YCG3 227 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 RASGRF2O14827 1237 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 TOM1L1O75674 476 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 C4BPAP04003 597 aaKnown RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 VIMP08670 466 aaKnown RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 RARGP13631 454 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 HSPA6P17066 643 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 ARF4P18085 180 aaPredicted RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 HOXC8P31273 242 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 MXI1P50539 228 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 GJA9P57773 515 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 GPC5P78333 572 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 TDRD10Q5VZ19 366 aaKnown RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 SPOPLQ6IQ16 392 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 ZPBP2Q6X784 338 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 EXOC3L1Q86VI1 746 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 CCDC105Q8IYK2 499 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 THNSL1Q8IYQ7 743 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 RPUSD2Q8IZ73 545 aaKnown RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 GIMAP7Q8NHV1 300 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 TMC2Q8TDI7 906 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 CD101Q93033 1021 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 BTBD6Q96KE9 485 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 PCDHB18PQ96TA0 734 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 TMEM109Q9BVC6 243 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 CFHR5Q9BXR6 569 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 MRPL4Q9BYD3 311 aaKnown RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 AP5M1Q9H0R1 490 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 SAMD15Q9P1V8 674 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 SRRDQ9UH36 339 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 TP73O15350 636 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 ATP6V1G2O95670 118 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 CST3P01034 146 aaPredicted RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 RARAP10276 462 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 RFX1P22670 979 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 HOXA11P31270 313 aaPredicted RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 COILP38432 576 aaPredicted RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 CPT1AP50416 773 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 MCL1Q07820 350 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 PSMD6Q15008 389 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 TCEAL1Q15170 157 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 LLGL1Q15334 1064 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 SIX1Q15475 284 aaPredicted RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 CNGA2Q16280 664 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 CYP1B1Q16678 543 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 FAM133BQ5BKY9 247 aaKnown RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 ATF7IP2Q5U623 682 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 CCSAPQ6IQ19 270 aaPredicted RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 TRPM8Q7Z2W7 1104 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 IFNLR1Q8IU57 520 aaPredicted RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 NLRP7Q8WX94 980 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 ART4Q93070 314 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 RPS6KC1Q96S38 1066 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 OSMRQ99650 979 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 TCHPQ9BT92 498 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 NFKBIZQ9BYH8 718 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 CDT1Q9H211 546 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 ABCF3Q9NUQ8 709 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 RNF19AQ9NV58 838 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 RBAKQ9NYW8 714 aaPredicted RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 PARP2Q9UGN5 583 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 CPSF3Q9UKF6 684 aaKnown RBP9.12□□□□□ -0.95
TRIM55-204ENST00000353317 COQ4Q9Y3A0 265 aa9.12□□□□□ -0.95
TRIM55-204ENST00000353317 NRCAMQ92823 1304 aa9.11□□□□□ -0.95
TRIM55-204ENST00000353317 SEPT4O43236 478 aa9.11□□□□□ -0.95
TRIM55-204ENST00000353317 SGPL1O95470 568 aa9.11□□□□□ -0.95
TRIM55-204ENST00000353317 GSTA1P08263 222 aa9.11□□□□□ -0.95
TRIM55-204ENST00000353317 CYP2C9P11712 490 aa9.11□□□□□ -0.95
TRIM55-204ENST00000353317 CREB1P16220 341 aa9.11□□□□□ -0.95
TRIM55-204ENST00000353317 GBP1P32455 592 aa9.11□□□□□ -0.95
TRIM55-204ENST00000353317 ELF1P32519 619 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms