RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 CD58P19256 250 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 NSFP46459 744 aaKnown RBP13.6□□□□□ -0.23
CLK3-201ENST00000345005 CARSP49589 748 aaKnown RBP13.6□□□□□ -0.23
CLK3-201ENST00000345005 CENPCQ03188 943 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 PDCLQ13371 301 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 KCNA10Q16322 511 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 WDR72Q3MJ13 1102 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 NAA35Q5VZE5 725 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 GDF6Q6KF10 455 aaPredicted RBP13.6□□□□□ -0.23
CLK3-201ENST00000345005 C11orf63Q6NUN7 778 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 MAATS1Q7Z4T9 603 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 CROCCP2Q86T23 111 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 SESTD1Q86VW0 696 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 NLRP14Q86W24 1093 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 CCDC26Q8TAB7 109 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 CD99L2Q8TCZ2 262 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 ZNF473Q8WTR7 871 aaKnown RBP13.6□□□□□ -0.23
CLK3-201ENST00000345005 ZNF606Q8WXB4 792 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 HPDLQ96IR7 371 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 VCPIP1Q96JH7 1222 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 RNPC3Q96LT9 517 aaKnown RBP13.6□□□□□ -0.23
CLK3-201ENST00000345005 CCT8L2Q96SF2 557 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 PSMB7Q99436 277 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 TMBIM4Q9HC24 238 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 COG5Q9UP83 839 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 AGAP1Q9UPQ3 857 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 POLR2BP30876 1174 aaKnown RBP13.6□□□□□ -0.23
CLK3-201ENST00000345005 RDXP35241 583 aaKnown RBP13.6□□□□□ -0.23
CLK3-201ENST00000345005 ARHGEF6Q15052 776 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 SKIDA1Q1XH10 827 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 FAM47CQ5HY64 1035 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 SERINC5Q86VE9 423 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 MCOLN2Q8IZK6 566 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 PXYLP1Q8TE99 480 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 CYFIP2Q96F07 1278 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 HES6Q96HZ4 224 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 SNX27Q96L92 541 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 KRT12Q99456 494 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 SLITRK6Q9H5Y7 841 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 CNOT10Q9H9A5 744 aaKnown RBP13.6□□□□□ -0.23
CLK3-201ENST00000345005 AVENQ9NQS1 362 aaPredicted RBP13.6□□□□□ -0.23
CLK3-201ENST00000345005 POLIQ9UNA4 740 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 PACSIN2Q9UNF0 486 aaPredicted RBP13.6□□□□□ -0.23
CLK3-201ENST00000345005 TRPV2Q9Y5S1 764 aa13.6□□□□□ -0.23
CLK3-201ENST00000345005 ANKRD65E5RJM6 399 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 KCNK3O14649 394 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 CHUKO15111 745 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 FNTAP49354 379 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 EIF3BP55884 814 aaKnown RBP13.59□□□□□ -0.23
CLK3-201ENST00000345005 ACTN3Q08043 901 aaPredicted RBP13.59□□□□□ -0.23
CLK3-201ENST00000345005 MYO1EQ12965 1108 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 MAP3K21Q5TCX8 1036 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 CCSAPQ6IQ19 270 aaPredicted RBP13.59□□□□□ -0.23
CLK3-201ENST00000345005 ALKAL1Q6UXT8 129 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 SCARA5Q6ZMJ2 495 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 TTC39CQ8N584 583 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 BEST2Q8NFU1 509 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 ZNF564Q8TBZ8 553 aaPredicted RBP13.59□□□□□ -0.23
CLK3-201ENST00000345005 RAET1EQ8TD07 263 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 CASKIN2Q8WXE0 1202 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 CPA5Q8WXQ8 436 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 NUP85Q9BW27 656 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 GOLPH3Q9H4A6 298 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 CNOT8Q9UFF9 292 aaKnown RBP13.59□□□□□ -0.23
CLK3-201ENST00000345005 CDY2AQ9Y6F7 541 aa13.59□□□□□ -0.23
CLK3-201ENST00000345005 THSD7BQ9C0I4 1608 aa13.58□□□□□ -0.23
CLK3-201ENST00000345005 GMNCA6NCL1 334 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 CABYRO75952 493 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 LSM8O95777 96 aaKnown RBP13.58□□□□□ -0.24
CLK3-201ENST00000345005 KRT14P02533 472 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 PAEPP09466 180 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 DNA2P51530 1060 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 NOMO3P69849 1222 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 SATB1Q01826 763 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 IFFO1Q0D2I5 559 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 ZBTB6Q15916 424 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 COL13A1Q5TAT6 717 aaPredicted RBP13.58□□□□□ -0.24
CLK3-201ENST00000345005 LIN9Q5TKA1 542 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 CCDC121Q6ZUS5 278 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 RNF180Q86T96 592 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 PHF13Q86YI8 300 aaPredicted RBP13.58□□□□□ -0.24
CLK3-201ENST00000345005 MYCBPAPQ8TBZ2 947 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 MAGEC3Q8TD91 643 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 PIK3R5Q8WYR1 880 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 RPS6KC1Q96S38 1066 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 ZNF518BQ9C0D4 1074 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 FAM114A2Q9NRY5 505 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 CNTN3Q9P232 1028 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 DDX20Q9UHI6 824 aaKnown RBP13.58□□□□□ -0.24
CLK3-201ENST00000345005 PLAAQ9Y263 795 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 ALG6Q9Y672 507 aa13.58□□□□□ -0.24
CLK3-201ENST00000345005 FAM170AA1A519 330 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 MIF4GDA9UHW6 222 aaKnown RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 MED7O43513 233 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 XPOTO43592 962 aaKnown RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 RECQL4O94761 1208 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 MYCNP04198 464 aaPredicted RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 ATP1A2P50993 1020 aa13.57□□□□□ -0.24
CLK3-201ENST00000345005 C1QBPQ07021 282 aaKnown RBP13.57□□□□□ -0.24
CLK3-201ENST00000345005 CEP85LQ5SZL2 805 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms