RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 CCDC59Q9P031 241 aaKnown RBP18.33■□□□□ 0.52
SMAD4-201ENST00000342988 CLIC4Q9Y696 253 aa18.33■□□□□ 0.52
SMAD4-201ENST00000342988 SRGAP2O75044 1071 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 RUNDC3AQ59EK9 446 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 RCOR2Q8IZ40 523 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 EPB41L4BQ9H329 900 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 SCUBE2Q9NQ36 999 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 TOP2BQ02880 1626 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 GNA13Q14344 377 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 FAM173BQ6P4H8 233 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 LRRC71Q8N4P6 559 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 GDAQ9Y2T3 454 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 IFT140Q96RY7 1462 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 PRODHO43272 600 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 SSNA1O43805 119 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 GALNT3Q14435 633 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 SYDE2Q5VT97 1194 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 RDM1Q8NG50 284 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 ZNF333Q96JL9 665 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 AP1S3Q96PC3 154 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 SLC39A10Q9ULF5 831 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 ANO9A1A5B4 782 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 P4HA2O15460 535 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 RAD23AP54725 363 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 NFIAQ12857 509 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 IZUMO3Q5VZ72 239 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 CMTR1Q8N1G2 835 aaKnown RBP18.32■□□□□ 0.52
SMAD4-201ENST00000342988 ABHD10Q9NUJ1 306 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 GSTK1Q9Y2Q3 226 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 RNF123Q5XPI4 1314 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 MYO3BQ8WXR4 1341 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 NPR3P17342 541 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 AGAP9Q5VTM2 703 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 RPTNQ6XPR3 784 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 NLRP10Q86W26 655 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 PADI4Q9UM07 663 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.32■□□□□ 0.52
SMAD4-201ENST00000342988 MYH7BA7E2Y1 1941 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 ACLYP53396 1101 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 EID3Q8N140 333 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 DBNDD2Q9BQY9 259 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 SH3GLB2Q9NR46 395 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 FAM160B2Q86V87 743 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 CHPFQ8IZ52 775 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 BDH2Q9BUT1 245 aa18.32■□□□□ 0.52
SMAD4-201ENST00000342988 LYNP07948 512 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 XXYLT1Q8NBI6 393 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 NSL1Q96IY1 281 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 CLIC6Q96NY7 704 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 GPR101Q96P66 508 aaPredicted RBP18.31■□□□□ 0.52
SMAD4-201ENST00000342988 C1orf50Q9BV19 199 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 SNX9Q9Y5X1 595 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 ZAP70P43403 619 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 PRDM5Q9NQX1 630 aaPredicted RBP18.31■□□□□ 0.52
SMAD4-201ENST00000342988 ING4Q9UNL4 249 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 CLPTM1O96005 669 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 LBPP18428 481 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 TCN1P20061 433 aaPredicted RBP18.31■□□□□ 0.52
SMAD4-201ENST00000342988 HAUS6Q7Z4H7 955 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 NLNQ9BYT8 704 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 IL1RL2Q9HB29 575 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 C8orf4Q9NR00 106 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 KHDRBS3O75525 346 aaKnown RBP18.31■□□□□ 0.52
SMAD4-201ENST00000342988 SEMA3FQ13275 785 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 KCNT1Q5JUK3 1230 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 KCTD1Q719H9 257 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 TBCKQ8TEA7 893 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 EFHD2Q96C19 240 aaPredicted RBP18.31■□□□□ 0.52
SMAD4-201ENST00000342988 TMEM237Q96Q45 408 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 HEMGNQ9BXL5 484 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 COMMD8Q9NX08 183 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 EFR3AQ14156 821 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 DGUOKQ16854 277 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 ATP13A5Q4VNC0 1218 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 SLC20A1Q8WUM9 679 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 GPR63Q9BZJ6 419 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 GRID1Q9ULK0 1009 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 IRAK3Q9Y616 596 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 DDHD2O94830 711 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 CDC42EP1Q00587 391 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 ITGADQ13349 1161 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 SIK2Q9H0K1 926 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 DAPK2Q9UIK4 370 aa18.31■□□□□ 0.52
SMAD4-201ENST00000342988 ATP9BO43861 1147 aa18.3■□□□□ 0.52
SMAD4-201ENST00000342988 TCF4P15884 667 aa18.3■□□□□ 0.52
SMAD4-201ENST00000342988 PIGHQ14442 188 aaPredicted RBP18.3■□□□□ 0.52
SMAD4-201ENST00000342988 ZCWPW1Q9H0M4 648 aa18.3■□□□□ 0.52
SMAD4-201ENST00000342988 NRDE2Q9H7Z3 1164 aa18.3■□□□□ 0.52
SMAD4-201ENST00000342988 TRIM10Q9UDY6 481 aa18.3■□□□□ 0.52
SMAD4-201ENST00000342988 TRAPPC8Q9Y2L5 1435 aa18.3■□□□□ 0.52
SMAD4-201ENST00000342988 RUSC2Q8N2Y8 1516 aa18.3■□□□□ 0.52
SMAD4-201ENST00000342988 BMP3P12645 472 aa18.3■□□□□ 0.52
SMAD4-201ENST00000342988 ARF3P61204 181 aaPredicted RBP18.3■□□□□ 0.52
SMAD4-201ENST00000342988 ARF1P84077 181 aaKnown RBP18.3■□□□□ 0.52
SMAD4-201ENST00000342988 MYH14Q7Z406 1995 aaKnown RBP18.3■□□□□ 0.52
SMAD4-201ENST00000342988 ATL2Q8NHH9 583 aa18.3■□□□□ 0.52
SMAD4-201ENST00000342988 RAPGEF3O95398 923 aa18.3■□□□□ 0.52
SMAD4-201ENST00000342988 AKAP7Q9P0M2 348 aaPredicted RBP18.3■□□□□ 0.52
SMAD4-201ENST00000342988 STOML2Q9UJZ1 356 aa18.3■□□□□ 0.52
SMAD4-201ENST00000342988 HIRAP54198 1017 aaPredicted RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms