RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TMEM161BQ8NDZ6 487 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 TCP10LQ8TDR4 215 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 CAMKK2Q96RR4 588 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 FZD1Q9UP38 647 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 KRT1P04264 644 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 NPTX2P47972 431 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 NCKAP1LP55160 1127 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 SCG3Q8WXD2 468 aaKnown RBP23.57■■□□□ 1.36
TRIM28-202ENST00000341753 BSNDQ8WZ55 320 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 FAM81BQ96LP2 452 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 TTC25Q96NG3 672 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 SAE1Q9UBE0 346 aaPredicted RBP23.57■■□□□ 1.36
TRIM28-202ENST00000341753 C2CD2Q9Y426 696 aa23.57■■□□□ 1.36
TRIM28-202ENST00000341753 COL2A1P02458 1487 aaPredicted RBP23.57■■□□□ 1.36
TRIM28-202ENST00000341753 EIF2AK2P19525 551 aaKnown RBP23.56■■□□□ 1.36
TRIM28-202ENST00000341753 PAPOLAP51003 745 aaKnown RBP23.56■■□□□ 1.36
TRIM28-202ENST00000341753 TXNRD3NBQ6F5E7 133 aa23.56■■□□□ 1.36
TRIM28-202ENST00000341753 ZC3H18Q86VM9 953 aaKnown RBP23.56■■□□□ 1.36
TRIM28-202ENST00000341753 SCYL3Q8IZE3 742 aa23.56■■□□□ 1.36
TRIM28-202ENST00000341753 EXD1Q8NHP7 514 aa23.56■■□□□ 1.36
TRIM28-202ENST00000341753 WDR60Q8WVS4 1066 aa23.56■■□□□ 1.36
TRIM28-202ENST00000341753 ZNF516Q92618 1163 aa23.56■■□□□ 1.36
TRIM28-202ENST00000341753 ANKFY1Q9P2R3 1169 aa23.56■■□□□ 1.36
TRIM28-202ENST00000341753 STOML1Q9UBI4 398 aa23.56■■□□□ 1.36
TRIM28-202ENST00000341753 FEM1BQ9UK73 627 aa23.56■■□□□ 1.36
TRIM28-202ENST00000341753 CAPN9O14815 690 aa23.56■■□□□ 1.36
TRIM28-202ENST00000341753 TROVE2P10155 538 aaKnown RBP eCLIP23.56■■□□□ 1.368e-18■□□□□ 9.2
TRIM28-202ENST00000341753 CETN2P41208 172 aa23.56■■□□□ 1.36
TRIM28-202ENST00000341753 RTKN2Q8IZC4 609 aa23.56■■□□□ 1.36
TRIM28-202ENST00000341753 PCDHB2Q9Y5E7 798 aa23.56■■□□□ 1.36
TRIM28-202ENST00000341753 SGK1O00141 431 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 AHCYL1O43865 530 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 HAUS5O94927 633 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 SERPINB3P29508 390 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 VHLP40337 213 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 PTP4A2Q12974 167 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 LIN9Q5TKA1 542 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 RINLQ6ZS11 566 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 DEFB132Q7Z7B7 95 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 NIM1KQ8IY84 436 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 CLEC4DQ8WXI8 215 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 FAM136AQ96C01 138 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 TLE6Q9H808 572 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 GYG2O15488 501 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 PTGER2P43116 358 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 CPA2P48052 419 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 TTC7BQ86TV6 843 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 FAM160B2Q86V87 743 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 ALLCQ8N6M5 410 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 PGAP2Q9UHJ9 254 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 LNPEPQ9UIQ6 1025 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 IVNS1ABPQ9Y6Y0 642 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 CLUHO75153 1309 aa23.55■■□□□ 1.36
TRIM28-202ENST00000341753 SIGLEC16A6NMB1 481 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 GSC2O15499 205 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 ATP9AO75110 1047 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 SNUPNO95149 360 aaKnown RBP23.54■■□□□ 1.36
TRIM28-202ENST00000341753 CYP1A1P04798 512 aaPredicted RBP23.54■■□□□ 1.36
TRIM28-202ENST00000341753 WNT7BP56706 349 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 DYNLT1P63172 113 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 ZBTB16Q05516 673 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 MSS51Q4VC12 460 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 EAPPQ56P03 285 aaPredicted RBP23.54■■□□□ 1.36
TRIM28-202ENST00000341753 RNASEH2BQ5TBB1 312 aaKnown RBP23.54■■□□□ 1.36
TRIM28-202ENST00000341753 CENPUQ71F23 418 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 SLITRK1Q96PX8 696 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 BTBD10Q9BSF8 475 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 SENP1Q9P0U3 644 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 ZNRF3Q9ULT6 936 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 ALOX15BO15296 676 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 TBX10O75333 385 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 MYCLP12524 364 aaPredicted RBP23.54■■□□□ 1.36
TRIM28-202ENST00000341753 GLRA2P23416 452 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 MRPS9P82933 396 aaKnown RBP23.54■■□□□ 1.36
TRIM28-202ENST00000341753 GCNT1Q02742 428 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 WDR72Q3MJ13 1102 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 ANKRD22Q5VYY1 191 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 TMEM270Q6UE05 265 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 TMEM174Q8WUU8 243 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 TRIM11Q96F44 468 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 MFSD14AQ96MC6 490 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 KMT5AQ9NQR1 393 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 SYNPO2Q9UMS6 1093 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 EXOC7Q9UPT5 735 aa23.54■■□□□ 1.36
TRIM28-202ENST00000341753 CCDC22O60826 627 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 GEMIN4P57678 1058 aaKnown RBP23.53■■□□□ 1.36
TRIM28-202ENST00000341753 MAP4K3Q8IVH8 894 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 VPS52Q8N1B4 723 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 MCUR1Q96AQ8 359 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 WNK4Q96J92 1243 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 TAAR1Q96RJ0 339 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 ARMCX1Q9P291 453 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 RABGEF1Q9UJ41 708 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 HNRNPDLO14979 420 aaKnown RBP23.53■■□□□ 1.36
TRIM28-202ENST00000341753 NPTXRO95502 500 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 ICAM1P05362 532 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 ASNSP08243 561 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 SLC18A1P54219 525 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 ZNF276Q8N554 614 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 PTCD3Q96EY7 689 aaKnown RBP23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms