RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 DCP1BQ8IZD4 617 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 OR6B3Q8NGW1 331 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 FEZF2Q8TBJ5 459 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 ACBD6Q9BR61 282 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 ADAM7Q9H2U9 754 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 APOBEC3GQ9HC16 384 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 RAB20Q9NX57 234 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 MAGEC2Q9UBF1 373 aaPredicted RBP17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 FAM50BQ9Y247 325 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 NFE2L3Q9Y4A8 694 aa17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 MTCL1Q9Y4B5 1905 aaKnown RBP17.01■□□□□ 0.31
CCDC28A-201ENST00000332797 SYCE3A1L190 88 aa17■□□□□ 0.31
CCDC28A-201ENST00000332797 MTMR11A4FU01 709 aa17■□□□□ 0.31
CCDC28A-201ENST00000332797 LETM1O95202 739 aaPredicted RBP17■□□□□ 0.31
CCDC28A-201ENST00000332797 SEC24AO95486 1093 aa17■□□□□ 0.31
CCDC28A-201ENST00000332797 AFPP02771 609 aaKnown RBP17■□□□□ 0.31
CCDC28A-201ENST00000332797 PDGFRBP09619 1106 aa17■□□□□ 0.31
CCDC28A-201ENST00000332797 IL9P15248 144 aa17■□□□□ 0.31
CCDC28A-201ENST00000332797 MTIF2P46199 727 aaKnown RBP17■□□□□ 0.31
CCDC28A-201ENST00000332797 CDH8P55286 799 aa17■□□□□ 0.31
CCDC28A-201ENST00000332797 KCNH2Q12809 1159 aa17■□□□□ 0.31
CCDC28A-201ENST00000332797 WDR44Q5JSH3 913 aa17■□□□□ 0.31
CCDC28A-201ENST00000332797 INTS6LQ5JSJ4 861 aaKnown RBP17■□□□□ 0.31
CCDC28A-201ENST00000332797 LRRTM3Q86VH5 581 aa17■□□□□ 0.31
CCDC28A-201ENST00000332797 CMASQ8NFW8 434 aaPredicted RBP17■□□□□ 0.31
CCDC28A-201ENST00000332797 ENOX1Q8TC92 643 aaKnown RBP17■□□□□ 0.31
CCDC28A-201ENST00000332797 SYT15Q9BQS2 421 aa17■□□□□ 0.31
CCDC28A-201ENST00000332797 SDCBP2Q9H190 292 aa17■□□□□ 0.31
CCDC28A-201ENST00000332797 ZDHHC7Q9NXF8 308 aa17■□□□□ 0.31
CCDC28A-201ENST00000332797 CCL16O15467 120 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 VNN2O95498 520 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 LMO2P25791 158 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 GNL1P36915 607 aaPredicted RBP16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 ASPAP45381 313 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 PSMC1P62191 440 aaKnown RBP16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 NFKBIBQ15653 356 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 UVSSAQ2YD98 709 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 ANO6Q4KMQ2 910 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 GPR149Q86SP6 731 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 TCEAL8Q8IYN2 117 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 NIF3L1Q9GZT8 377 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 SAMSN1Q9NSI8 373 aaKnown RBP16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 MAFFQ9ULX9 164 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 COQ4Q9Y3A0 265 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 A8MXQ7 604 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 LRG1P02750 347 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 HNRNPA1P09651 372 aaKnown RBP eCLIP16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 FAM163BP0C2L3 166 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 CETN1Q12798 172 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 DUSP4Q13115 394 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 SMAD2Q15796 467 aaKnown RBP16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 CCDC142Q17RM4 750 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 TJAP1Q5JTD0 557 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 ATAD1Q8NBU5 361 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 SUSD6Q92537 303 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 SMG7Q92540 1137 aaKnown RBP16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 ZNF707Q96C28 371 aaPredicted RBP16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 RIPOR3Q96MK2 946 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 BCO2Q9BYV7 579 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 PRKD2Q9BZL6 878 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 CRISPLD1Q9H336 500 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 PIDD1Q9HB75 910 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 TMLHEQ9NVH6 421 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 ABI2Q9NYB9 513 aaPredicted RBP16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 CDH9Q9ULB4 789 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 SLC27A5Q9Y2P5 690 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 NME7Q9Y5B8 376 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 INSL5Q9Y5Q6 135 aa16.99■□□□□ 0.31
CCDC28A-201ENST00000332797 KCNJ18B7U540 433 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 PMM2O15305 246 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 P4HA2O15460 535 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 ATP2C2O75185 946 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 XYLBO75191 536 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 BMP1P13497 986 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 HOXA9P31269 272 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 MTHFRP42898 656 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 MYL5Q02045 173 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 LRMPQ12912 555 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 KCNJ12Q14500 433 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 CBX2Q14781 532 aaPredicted RBP16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 ATAT1Q5SQI0 421 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 RTL10Q7L3V2 364 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 TTC9BQ8N6N2 239 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 PKMYT1Q99640 499 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 NAT10Q9H0A0 1025 aaKnown RBP16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 DPEP3Q9H4B8 488 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 GTF3C4Q9UKN8 822 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 YIPF1Q9Y548 306 aa16.98■□□□□ 0.31
CCDC28A-201ENST00000332797 MYBPHLA2RUH7 354 aa16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 CD58P19256 250 aa16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 TWF1Q12792 350 aa16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 SMARCB1Q12824 385 aa16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 NFE2Q16621 373 aaPredicted RBP16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 ZSCAN23Q3MJ62 389 aa16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 MDH1BQ5I0G3 518 aa16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 AOPEPQ8N6M6 819 aa16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 SPPL2BQ8TCT7 592 aa16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 C2orf15Q8WU43 125 aaKnown RBP16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 TATDN2Q93075 761 aa16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 NECTIN4Q96NY8 510 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms