RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 PCDHB12Q9Y5F1 795 aa29.2■■■□□ 2.26
CTDNEP1-201ENST00000318988 EIF3CLB5ME19 914 aaKnown RBP29.19■■■□□ 2.26
CTDNEP1-201ENST00000318988 MMEP08473 750 aa29.19■■■□□ 2.26
CTDNEP1-201ENST00000318988 BRD2P25440 801 aaKnown RBP29.19■■■□□ 2.26
CTDNEP1-201ENST00000318988 LMO2P25791 158 aa29.19■■■□□ 2.26
CTDNEP1-201ENST00000318988 KRT83P78385 493 aa29.19■■■□□ 2.26
CTDNEP1-201ENST00000318988 SLC18A3Q16572 532 aa29.19■■■□□ 2.26
CTDNEP1-201ENST00000318988 OSTM1Q86WC4 334 aa29.19■■■□□ 2.26
CTDNEP1-201ENST00000318988 ZNF606Q8WXB4 792 aa29.19■■■□□ 2.26
CTDNEP1-201ENST00000318988 EIF3CQ99613 913 aaKnown RBP29.19■■■□□ 2.26
CTDNEP1-201ENST00000318988 UBE2OQ9C0C9 1292 aaKnown RBP29.19■■■□□ 2.26
CTDNEP1-201ENST00000318988 LUC7LQ9NQ29 371 aaKnown RBP29.19■■■□□ 2.26
CTDNEP1-201ENST00000318988 PYCARDQ9ULZ3 195 aa29.19■■■□□ 2.26
CTDNEP1-201ENST00000318988 COL4A6Q14031 1691 aa29.18■■■□□ 2.26
CTDNEP1-201ENST00000318988 GFPT1Q06210 699 aaPredicted RBP29.18■■■□□ 2.26
CTDNEP1-201ENST00000318988 ASTE1Q2TB18 679 aaPredicted RBP29.18■■■□□ 2.26
CTDNEP1-201ENST00000318988 C9orf50Q5SZB4 431 aa29.18■■■□□ 2.26
CTDNEP1-201ENST00000318988 CEP57Q86XR8 500 aa29.18■■■□□ 2.26
CTDNEP1-201ENST00000318988 DDX1Q92499 740 aaKnown RBP29.18■■■□□ 2.26
CTDNEP1-201ENST00000318988 TMEM169Q96HH4 297 aa29.18■■■□□ 2.26
CTDNEP1-201ENST00000318988 IGSF21Q96ID5 467 aa29.18■■■□□ 2.26
CTDNEP1-201ENST00000318988 SPG21Q9NZD8 308 aa29.18■■■□□ 2.26
CTDNEP1-201ENST00000318988 TKTP29401 623 aaKnown RBP29.17■■■□□ 2.26
CTDNEP1-201ENST00000318988 PPM1AP35813 382 aa29.17■■■□□ 2.26
CTDNEP1-201ENST00000318988 SHHQ15465 462 aa29.17■■■□□ 2.26
CTDNEP1-201ENST00000318988 TOGARAM2Q6ZUX3 1019 aa29.17■■■□□ 2.26
CTDNEP1-201ENST00000318988 CRYBG2Q8N1P7 616 aa29.17■■■□□ 2.26
CTDNEP1-201ENST00000318988 SYT11Q9BT88 431 aa29.17■■■□□ 2.26
CTDNEP1-201ENST00000318988 GPR62Q9BZJ7 368 aa29.17■■■□□ 2.26
CTDNEP1-201ENST00000318988 CEP83Q9Y592 693 aa29.17■■■□□ 2.26
CTDNEP1-201ENST00000318988 A0A087X0T9 212 aa29.16■■■□□ 2.26
CTDNEP1-201ENST00000318988 DDX3XO00571 662 aaKnown RBP eCLIP29.16■■■□□ 2.262e-11■■■■□ 21
CTDNEP1-201ENST00000318988 FAM228BP0C875 321 aa29.16■■■□□ 2.26
CTDNEP1-201ENST00000318988 CHRNB2P17787 502 aa29.16■■■□□ 2.26
CTDNEP1-201ENST00000318988 FMO1Q01740 532 aa29.16■■■□□ 2.26
CTDNEP1-201ENST00000318988 STILQ15468 1287 aa29.16■■■□□ 2.26
CTDNEP1-201ENST00000318988 PDZRN4Q6ZMN7 1036 aaPredicted RBP29.16■■■□□ 2.26
CTDNEP1-201ENST00000318988 TRIM72Q6ZMU5 477 aa29.16■■■□□ 2.26
CTDNEP1-201ENST00000318988 TMEM173Q86WV6 379 aaPredicted RBP29.16■■■□□ 2.26
CTDNEP1-201ENST00000318988 DESI2Q9BSY9 194 aa29.16■■■□□ 2.26
CTDNEP1-201ENST00000318988 DPEP3Q9H4B8 488 aa29.16■■■□□ 2.26
CTDNEP1-201ENST00000318988 CDH9Q9ULB4 789 aa29.16■■■□□ 2.26
CTDNEP1-201ENST00000318988 CCDC175P0C221 793 aa29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 ACAT1P24752 427 aaKnown RBP29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 CCDC122Q5T0U0 273 aa29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 SLC39A11Q8N1S5 342 aa29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 B3GALNT2Q8NCR0 500 aa29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 LNX1Q8TBB1 728 aaPredicted RBP29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 TFAP2BQ92481 460 aa29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 SYT15Q9BQS2 421 aa29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 ACBD6Q9BR61 282 aa29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 NME7Q9Y5B8 376 aa29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 HCRTO43612 131 aa29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 PTPN1P18031 435 aaKnown RBP29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 TSPY1Q01534 308 aa29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 ALKBH5Q6P6C2 394 aaKnown RBP29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 SLC30A5Q8TAD4 765 aa29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 BCL7CQ8WUZ0 217 aaPredicted RBP29.15■■■□□ 2.26
CTDNEP1-201ENST00000318988 PTPRSQ13332 1948 aa29.14■■■□□ 2.26
CTDNEP1-201ENST00000318988 LCA5LO95447 670 aa29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 FGFR3P22607 806 aa29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 PSMC1P62191 440 aaKnown RBP29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 CYP27A1Q02318 531 aa29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 CNGA2Q16280 664 aa29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 C10orf76Q5T2E6 689 aa29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 TXLNBQ8N3L3 684 aa29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 C12orf29Q8N999 325 aa29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 ACRBPQ8NEB7 543 aa29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 SP7Q8TDD2 431 aaPredicted RBP29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 TTPALQ9BTX7 342 aa29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 FAM49BQ9NUQ9 324 aa29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 NAGPAQ9UK23 515 aa29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 ADGRG1Q9Y653 693 aa29.14■■■□□ 2.25
CTDNEP1-201ENST00000318988 H0YGN5 161 aa29.13■■■□□ 2.25
CTDNEP1-201ENST00000318988 CCP110O43303 1012 aa29.13■■■□□ 2.25
CTDNEP1-201ENST00000318988 ZSCAN12O43309 604 aa29.13■■■□□ 2.25
CTDNEP1-201ENST00000318988 OAZ2O95190 189 aa29.13■■■□□ 2.25
CTDNEP1-201ENST00000318988 SSTR3P32745 418 aaPredicted RBP29.13■■■□□ 2.25
CTDNEP1-201ENST00000318988 KRT17Q04695 432 aa29.13■■■□□ 2.25
CTDNEP1-201ENST00000318988 USP41Q3LFD5 358 aa29.13■■■□□ 2.25
CTDNEP1-201ENST00000318988 VARS2Q5ST30 1063 aaKnown RBP29.13■■■□□ 2.25
CTDNEP1-201ENST00000318988 KIAA1841Q6NSI8 718 aa29.13■■■□□ 2.25
CTDNEP1-201ENST00000318988 KIAA1328Q86T90 577 aa29.13■■■□□ 2.25
CTDNEP1-201ENST00000318988 ZSCAN30Q86W11 494 aa29.13■■■□□ 2.25
CTDNEP1-201ENST00000318988 PCDHGC3Q9UN70 934 aa29.13■■■□□ 2.25
CTDNEP1-201ENST00000318988 H7C4K7 107 aa29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 MSNP26038 577 aaKnown RBP29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 MAGEA1P43355 309 aa29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 ZNF280DQ6N043 979 aa29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 PASD1Q8IV76 773 aa29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 CLP1Q92989 425 aaKnown RBP29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 CYFIP2Q96F07 1278 aa29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 PCDHB18PQ96TA0 734 aa29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 HESX1Q9UBX0 185 aa29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 STK39Q9UEW8 545 aa29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 WDR3Q9UNX4 943 aaKnown RBP eCLIP29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 PPP2R2CQ9Y2T4 447 aa29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 RWDD3Q9Y3V2 267 aa29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 PCDHA13Q9Y5I0 950 aa29.12■■■□□ 2.25
CTDNEP1-201ENST00000318988 TMCO5BA8MYB1 307 aa29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms