RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 TMPRSS15P98073 1019 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 TTC23LQ6PF05 361 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 PPIL6Q8IXY8 311 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 APPL2Q8NEU8 664 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ADCY4Q8NFM4 1077 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 VAT1Q99536 393 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 ST7Q9NRC1 585 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 FBXO28Q9NVF7 368 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 LGALS13Q9UHV8 139 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 PCDHB2Q9Y5E7 798 aa5.47□□□□□ -1.53
SCN1A-201ENST00000303395 PALMO75781 387 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 PDE5AO76074 875 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 CD2BP2O95400 341 aaKnown RBP5.46□□□□□ -1.53
SCN1A-201ENST00000303395 CAPN1P07384 714 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 FAM58BPP0C7Q3 252 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 VCAM1P19320 739 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 NNMTP40261 264 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 GEMIN4P57678 1058 aaKnown RBP5.46□□□□□ -1.53
SCN1A-201ENST00000303395 YWHAGP61981 247 aaKnown RBP eCLIP5.46□□□□□ -1.53
SCN1A-201ENST00000303395 IFRD2Q12894 506 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-201ENST00000303395 RCN2Q14257 317 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 SKIV2LQ15477 1246 aaKnown RBP5.46□□□□□ -1.53
SCN1A-201ENST00000303395 SLC15A2Q16348 729 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 INSCQ1MX18 579 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 GRAMD1BQ3KR37 738 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 MIS18BP1Q6P0N0 1132 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 KRT28Q7Z3Y7 464 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 POLNQ7Z5Q5 900 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 GPR141Q7Z602 305 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 RNASE11Q8TAA1 199 aaKnown RBP5.46□□□□□ -1.53
SCN1A-201ENST00000303395 OTUD5Q96G74 571 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 OSBPL6Q9BZF3 934 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 FANCEQ9HB96 536 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 RIC8BQ9NVN3 520 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 SYNDIG1LA6NDD5 238 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 LRRC53A6NM62 1247 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 PSMD12O00232 456 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-201ENST00000303395 CD3EAPO15446 510 aaKnown RBP5.46□□□□□ -1.53
SCN1A-201ENST00000303395 DYNC1LI2O43237 492 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-201ENST00000303395 AP1G2O75843 785 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 CLPTM1O96005 669 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 SPRP35270 261 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-201ENST00000303395 EIF6P56537 245 aaKnown RBP5.46□□□□□ -1.53
SCN1A-201ENST00000303395 OLR1P78380 273 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 YWHAHQ04917 246 aaPredicted RBP5.46□□□□□ -1.53
SCN1A-201ENST00000303395 PICALMQ13492 652 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 LRRC6Q86X45 466 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 CENPSQ8N2Z9 138 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 MIGA1Q8NAN2 632 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 MCUQ8NE86 351 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 SLC26A7Q8TE54 656 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 NUP85Q9BW27 656 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 RACGAP1Q9H0H5 632 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 RAD21L1Q9H4I0 556 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 EFCAB1Q9HAE3 211 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 PCDH9Q9HC56 1237 aa5.46□□□□□ -1.53
SCN1A-201ENST00000303395 PDGFRBP09619 1106 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 PHKG2P15735 406 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 ITGAXP20702 1163 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 HDLBPQ00341 1268 aaKnown RBP5.46□□□□□ -1.54
SCN1A-201ENST00000303395 PTPN12Q05209 780 aaKnown RBP5.46□□□□□ -1.54
SCN1A-201ENST00000303395 PKP1Q13835 747 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 CCDC142Q17RM4 750 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 PDCD4Q53EL6 469 aaKnown RBP5.46□□□□□ -1.54
SCN1A-201ENST00000303395 STXBP5Q5T5C0 1151 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 STRA8Q7Z7C7 330 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 ERICH1Q86X53 443 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 METTL23Q86XA0 190 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 ERO1BQ86YB8 467 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 IFNLR1Q8IU57 520 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-201ENST00000303395 HS6ST3Q8IZP7 471 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 AGR3Q8TD06 166 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 ERLEC1Q96DZ1 483 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 OSBPL11Q9BXB4 747 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 PRKD2Q9BZL6 878 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 SH3GLB1Q9Y371 365 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 AFF2P51816 1311 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 SHPRHQ149N8 1683 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 BBIP1A8MTZ0 92 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 CDC40O60508 579 aaKnown RBP eCLIP5.46□□□□□ -1.54
SCN1A-201ENST00000303395 MRPS14O60783 128 aaKnown RBP5.46□□□□□ -1.54
SCN1A-201ENST00000303395 SEC31AO94979 1220 aaKnown RBP5.46□□□□□ -1.54
SCN1A-201ENST00000303395 PCNAP12004 261 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 MAPK1P28482 360 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 ALDH1B1P30837 517 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 EPHB1P54762 984 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 NCKAP1LP55160 1127 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 RCN1Q15293 331 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 SLC25A24Q6NUK1 477 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 SLC9A9Q8IVB4 645 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 MYO1HQ8N1T3 1032 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 NEDD1Q8NHV4 660 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 SNRNP27Q8WVK2 155 aaKnown RBP5.46□□□□□ -1.54
SCN1A-201ENST00000303395 HSPH1Q92598 858 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 C18orf25Q96B23 403 aaPredicted RBP5.46□□□□□ -1.54
SCN1A-201ENST00000303395 ELAC2Q9BQ52 826 aaKnown RBP5.46□□□□□ -1.54
SCN1A-201ENST00000303395 C9orf16Q9BUW7 83 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 FTOQ9C0B1 505 aaKnown RBP eCLIP5.46□□□□□ -1.54
SCN1A-201ENST00000303395 DOLKQ9UPQ8 538 aa5.46□□□□□ -1.54
SCN1A-201ENST00000303395 LOC102724159A0A0B4J2E5 919 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms