RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ZNF786Q8N393 782 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 ZIM3Q96PE6 472 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 IMPAD1Q9NX62 359 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 MBD2Q9UBB5 411 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 ASNA1O43681 348 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 CACNB3P54284 484 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 CDKL3Q8IVW4 592 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-201ENST00000295550 CAVIN3Q969G5 261 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 ACAP3Q96P50 834 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 PPP1R16BQ96T49 567 aa10.3□□□□□ -0.76
COL6A3-201ENST00000295550 GOLGA8TH3BQL2 631 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 K7ERI5 159 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 P4HA2O15460 535 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 TMEM253P0C7T8 217 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 TCN1P20061 433 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-201ENST00000295550 GALCP54803 685 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 PDAP1Q13442 181 aaKnown RBP10.29□□□□□ -0.76
COL6A3-201ENST00000295550 SLC27A3Q5K4L6 730 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 RIN3Q8TB24 985 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 H3BQF6 201 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 SMARCAL1Q9NZC9 954 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 TPP2P29144 1249 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-201ENST00000295550 AP3M2P53677 418 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 COG2Q14746 738 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 ZNF667Q5HYK9 610 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 JAMLQ86YT9 394 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 RTKN2Q8IZC4 609 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 AHI1Q8N157 1196 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 FOXP3Q9BZS1 431 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 BFARQ9NZS9 450 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 UBE2Q2LH0YL09 131 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 KLHL2O95198 593 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 ALBP02768 609 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 GNA15P30679 374 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 C11orf74Q86VG3 221 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 ANKMY2Q8IV38 441 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 NARS2Q96I59 477 aaKnown RBP10.29□□□□□ -0.76
COL6A3-201ENST00000295550 C11orf70Q9BRQ4 267 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 TRIM54Q9BYV2 358 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 ZCWPW1Q9H0M4 648 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 MST1RQ04912 1400 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 GYS1P13807 737 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 THEMIS2Q5TEJ8 643 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 ZC3H7BQ9UGR2 993 aaKnown RBP10.29□□□□□ -0.76
COL6A3-201ENST00000295550 MYH7BA7E2Y1 1941 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 RGPD1P0DJD0 1748 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 DGKIO75912 1065 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 FGFR2P21802 821 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 TSPAN17Q96FV3 270 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 PARVAQ9NVD7 372 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 RGPD2P0DJD1 1756 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 NUP107P57740 925 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 CNGA2Q16280 664 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 OR8H2Q8N162 312 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 ATL2Q8NHH9 583 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 DEPDC7Q96QD5 511 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 XPO6Q96QU8 1125 aaKnown RBP10.29□□□□□ -0.76
COL6A3-201ENST00000295550 SPRTNQ9H040 489 aaPredicted RBP10.29□□□□□ -0.76
COL6A3-201ENST00000295550 PCMTD2Q9NV79 361 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 FAM153AQ9UHL3 310 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 CSPG5O95196 566 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 OSBPP22059 807 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 DDI1Q8WTU0 396 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 NOD2Q9HC29 1040 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 PAPOLBQ9NRJ5 636 aaKnown RBP10.29□□□□□ -0.76
COL6A3-201ENST00000295550 L1RE1Q9UN81 338 aa10.29□□□□□ -0.76
COL6A3-201ENST00000295550 SUPT3HB4E1H0 165 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 TPCN2Q8NHX9 752 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 CASKIN2Q8WXE0 1202 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 RNF25Q96BH1 459 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-201ENST00000295550 NLRP4Q96MN2 994 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 CD248Q9HCU0 757 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 MRGBPQ9NV56 204 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 CDY2AQ9Y6F7 541 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 CDY1Q9Y6F8 540 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 TARSP26639 723 aaKnown RBP10.28□□□□□ -0.76
COL6A3-201ENST00000295550 NPEPPSP55786 919 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 MAPRE1Q15691 268 aaKnown RBP10.28□□□□□ -0.76
COL6A3-201ENST00000295550 PLEKHA7Q6IQ23 1121 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 CLMNQ96JQ2 1002 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 GNAT1P11488 350 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 STX3Q13277 289 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 PKN3Q6P5Z2 889 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 FANCEQ9HB96 536 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 TNS2Q63HR2 1409 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 SDC4P31431 198 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 HSD17B3P37058 310 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 CAPZA2P47755 286 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 PKN1Q16512 942 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 RTL3Q8N8U3 475 aaKnown RBP10.28□□□□□ -0.76
COL6A3-201ENST00000295550 NYAP2Q9P242 653 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 YWHABP31946 246 aaKnown RBP10.28□□□□□ -0.76
COL6A3-201ENST00000295550 TTC39CQ8N584 583 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 PGBD4Q96DM1 585 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 OSBPL8Q9BZF1 889 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 F5H6K3 240 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 DNALI1O14645 258 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-201ENST00000295550 USP1O94782 785 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 BCAR1P56945 870 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 KLRC3Q07444 240 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms