RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 CASC4Q6P4E1 433 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 C1orf228Q6PIY5 440 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 ZCCHC23Q6ZST2 131 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 THNSL1Q8IYQ7 743 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 DEPTORQ8TB45 409 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 MAGEC3Q8TD91 643 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 PAFAH2Q99487 392 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 THTPAQ9BU02 230 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 MSTO1Q9BUK6 570 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 TSSK1BQ9BXA7 367 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 MRPL47Q9HD33 250 aaKnown RBP12.6□□□□□ -0.39
USHBP1-201ENST00000252597 BATF3Q9NR55 127 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 KIAA1551Q9HCM1 1747 aa12.6□□□□□ -0.39
USHBP1-201ENST00000252597 FAM237BA0A1B0GVD1 139 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 B2RBV5 119 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 PIK3CDO00329 1044 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 PEX11AO75192 247 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 VIL1P09327 827 aaKnown RBP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 WNT7BP56706 349 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 PSMC5P62195 406 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 TMPRSS15P98073 1019 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 CYP24A1Q07973 514 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 GALNTL6Q49A17 601 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 TMEM63BQ5T3F8 832 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 PODNQ7Z5L7 613 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 BBOF1Q8ND07 529 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 ACTL9Q8TC94 416 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 IWS1Q96ST2 819 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 POLR3FQ9H1D9 316 aaPredicted RBP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 PACSIN3Q9UKS6 424 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 MEI4A8MW99 385 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 CSDE1O75534 798 aaKnown RBP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 MYL2P10916 166 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 PGM1P36871 562 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 NR1H3Q13133 447 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 MAMLD1Q13495 774 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 PPP2R5DQ14738 602 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 SLC15A2Q16348 729 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 SPDYCQ5MJ68 293 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 AGGF1Q8N302 714 aaeCLIP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 NETO2Q8NC67 525 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 MASTLQ96GX5 879 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 PPP1R36Q96LQ0 422 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 CYP39A1Q9NYL5 469 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 AGO2Q9UKV8 859 aaKnown RBP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 PPP1R12AO14974 1030 aaPredicted RBP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 TPBGLP0DKB5 382 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 PYGBP11216 843 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 FGFR1P11362 822 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 GDF10P55107 478 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 OTUD4Q01804 1114 aaKnown RBP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 MKRN3Q13064 507 aaKnown RBP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 TRPC3Q13507 836 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 CCNG2Q16589 344 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 CYP1B1Q16678 543 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 ALYREFQ86V81 257 aaKnown RBP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 ARID3BQ8IVW6 561 aaPredicted RBP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 TMEM161BQ8NDZ6 487 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 OR5B17Q8NGF7 314 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 MORC4Q8TE76 937 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 ACAP3Q96P50 834 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 TRIM56Q9BRZ2 755 aaKnown RBP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 MANSC1Q9H8J5 431 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 PSMC3IPQ9P2W1 217 aaPredicted RBP12.59□□□□□ -0.39
USHBP1-201ENST00000252597 TJP2Q9UDY2 1190 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 WASF2Q9Y6W5 498 aa12.59□□□□□ -0.39
USHBP1-201ENST00000252597 K7ERI5 159 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 OPHN1O60890 802 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 TOM1L1O75674 476 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 USP1O94782 785 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 ASMTLO95671 621 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 KCNA3P22001 575 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 SERPINB4P48594 390 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 BAATQ14032 418 aaPredicted RBP12.58□□□□□ -0.4
USHBP1-201ENST00000252597 DDX60LQ5H9U9 1706 aaKnown RBP12.58□□□□□ -0.4
USHBP1-201ENST00000252597 KCTD6Q8NC69 237 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 FEZF2Q8TBJ5 459 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 SCG3Q8WXD2 468 aaKnown RBP12.58□□□□□ -0.4
USHBP1-201ENST00000252597 PTPRN2Q92932 1015 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 GBP5Q96PP8 586 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 SYT15Q9BQS2 421 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 XPO7Q9UIA9 1087 aaKnown RBP12.58□□□□□ -0.4
USHBP1-201ENST00000252597 PLIN4Q96Q06 1357 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 ASTN2O75129 1339 aaPredicted RBP12.58□□□□□ -0.4
USHBP1-201ENST00000252597 TCRBV7S3A2A0A539 114 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 CCDC189A1A4V9 331 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 WDR64B1ANS9 1081 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 BHMG1C9JSJ3 638 aaPredicted RBP12.58□□□□□ -0.4
USHBP1-201ENST00000252597 MAP3K13O43283 966 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 PEX10O60683 326 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 EDF1O60869 148 aaKnown RBP12.58□□□□□ -0.4
USHBP1-201ENST00000252597 STAM2O75886 525 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 SMNDC1O75940 238 aaKnown RBP eCLIP12.58□□□□□ -0.4
USHBP1-201ENST00000252597 CCNE2O96020 404 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 MRPS9P82933 396 aaKnown RBP12.58□□□□□ -0.4
USHBP1-201ENST00000252597 SATB1Q01826 763 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 CAV1Q03135 178 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 PLEKHG4Q58EX7 1191 aa12.58□□□□□ -0.4
USHBP1-201ENST00000252597 ANO7Q6IWH7 933 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms