RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 OTOFQ9HC10 1997 aa6.33□□□□□ -1.4
VPS13D-201ENST00000011700 USP17L3A6NCW0 530 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 USP17L4A6NCW7 530 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ACADLP28330 430 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 PSMC1P62191 440 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 MRNIPQ6NTE8 343 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 USP17L1Q7RTZ2 530 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 DCLK2Q8N568 766 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 SH3KBP1Q96B97 665 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 CCT8L2Q96SF2 557 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ELAC2Q9BQ52 826 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 MUC13Q9H3R2 512 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ING3Q9NXR8 418 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 SNX9Q9Y5X1 595 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ACAT1P24752 427 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 NDUFAF6Q330K2 333 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ZCWPW2Q504Y3 356 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 BOLA3Q53S33 107 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 RDH13Q8NBN7 331 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 FAM167BQ9BTA0 163 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 PHF20Q9BVI0 1012 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 SLITRK2Q9H156 845 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 KLHL28Q9NXS3 571 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ADAMTS1Q9UHI8 967 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 KCNH4Q9UQ05 1017 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 RGS5O15539 181 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 NDUFS3O75489 264 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 KRT34O76011 436 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 CDK16Q00536 496 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 TSTA3Q13630 321 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 MAPKAPK5Q8IW41 473 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 NSL1Q96IY1 281 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 PPP1R36Q96LQ0 422 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 MAGEB18Q96M61 343 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 DNAAF2Q9NVR5 837 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 USE1Q9NZ43 259 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 TPRKBQ9Y3C4 175 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 CDHR2Q9BYE9 1310 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 PALLDQ8WX93 1383 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ERI2A8K979 691 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 NFIBO00712 420 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 SERPINB8P50452 374 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 TFDP3Q5H9I0 405 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 BICRALQ6AI39 1079 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 CCDC60Q8IWA6 550 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 NSUN7Q8NE18 718 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 TRAPPC9Q96Q05 1148 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ZCCHC2Q9C0B9 1178 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 TRPM5Q9NZQ8 1165 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 EIF3LQ9Y262 564 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 DCDC2CA8MYV0 355 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 AKAP10O43572 662 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 CD2BP2O95400 341 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 GZMAP12544 262 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 LSP1P33241 339 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 USP6P35125 1406 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ATP2C1P98194 919 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 CHRNB3Q05901 458 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 DMPKQ09013 629 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 LBRQ14739 615 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 OOSP2Q86WS3 158 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ZBED8Q8IZ13 594 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 MSL3Q8N5Y2 521 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 LRRC39Q96DD0 335 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 DGCR14Q96DF8 476 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 CCT7Q99832 543 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 C1QTNF7Q9BXJ2 289 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 MAF1Q9H063 256 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 DNPEPQ9ULA0 475 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 PKP3Q9Y446 797 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 CABIN1Q9Y6J0 2220 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 UTYO14607 1347 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ASB14A6NK59 587 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ST8SIA6P61647 398 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 GPD1LQ8N335 351 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 PIK3C3Q8NEB9 887 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 SKA1Q96BD8 255 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 PAGE5Q96GU1 130 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 VCPIP1Q96JH7 1222 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ECSITQ9BQ95 431 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 RACGAP1Q9H0H5 632 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 PKD2L1Q9P0L9 805 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 APEX2Q9UBZ4 518 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 SDK1Q7Z5N4 2213 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 SPTBN1Q01082 2364 aaKnown RBP6.32□□□□□ -1.4
VPS13D-201ENST00000011700 CCNA2P20248 432 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 ARHGEF7Q14155 803 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 EFHC1Q5JVL4 640 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 UNC45BQ8IWX7 931 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 MICU2Q8IYU8 434 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 UBE2E3Q969T4 207 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 TSPAN18Q96SJ8 248 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 OSBPL6Q9BZF3 934 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 SMYD3Q9H7B4 428 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 IRAK3Q9Y616 596 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 NEDD4P46934 1319 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 H0YC42 278 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 RNF103O00237 685 aa6.32□□□□□ -1.4
VPS13D-201ENST00000011700 LCA5LO95447 670 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms