RNA–Protein interactions for RNA: ENSMUST00000004430.13

Clcn3-201, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,175 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-201ENSMUST00000004430 Akt3Q9WUA6 479 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 4930523C07RikE9Q2T4 99 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Gm45837F7D3W5 961 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Nedd1P33215 660 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 ItkQ03526 625 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Vars2Q3U2A8 1060 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Tpp2Q64514 1262 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Wasf2Q8BH43 497 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 D630039A03RikQ8K0M7 236 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Slc51aQ8R000 340 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Ascc2Q91WR3 749 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Ivns1abpQ920Q8 642 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Pde2aQ922S4 916 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Gm3173A6NAS3 172 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Gm3020E9Q3J7 150 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Gm2897K7N6T7 172 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Mmp13P33435 472 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Atp11aP98197 1187 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Rbl2Q64700 1135 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Capn11Q6J756 714 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Znf507Q6ZPY5 941 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Ankrd45Q810N6 248 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Suds3Q8BR65 328 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Sept11Q8C1B7 431 aaKnown RBP13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Gm3411Q8C7R2 150 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Mtif2Q91YJ5 727 aaKnown RBP13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Rilpl2Q99LE1 197 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Rpa3Q9CQ71 121 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Med7Q9CZB6 233 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Ppp1r12aQ9DBR7 1029 aaKnown RBP13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Cyp39a1Q9JKJ9 470 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 RptorQ8K4Q0 1335 aa13.34□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Gm3187M0QWW3 260 aa13.33□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Capn6O35646 641 aa13.33□□□□□ -0.27
Clcn3-201ENSMUST00000004430 TdgP56581 421 aa13.33□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Arl4aP61213 200 aa13.33□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Npas2P97460 816 aa13.33□□□□□ -0.27
Clcn3-201ENSMUST00000004430 NfibP97863 570 aaKnown RBP13.33□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Q3TQQ9 903 aa13.33□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Ag2Q3UPL5 249 aa13.33□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Pick1Q62083 416 aa13.33□□□□□ -0.27
Clcn3-201ENSMUST00000004430 NkrfQ8BY02 690 aaKnown RBP13.33□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Mettl24Q8CCB5 363 aa13.33□□□□□ -0.27
Clcn3-201ENSMUST00000004430 Cdc25cP48967 447 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 KhsrpQ3U0V1 748 aaKnown RBP13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Smcr8Q3UMB5 935 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Scaf8Q6DID3 1268 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Ccdc90bQ8C3X2 256 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 TwnkQ8CIW5 685 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 CpzQ8R4V4 654 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Pdk3Q922H2 415 aaKnown RBP13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Mzb1Q9D8I1 188 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Gm29554A0A087WNW4 188 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Pus7B7ZNL8 666 aaKnown RBP13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Usp17lbE9Q9U0 468 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Serpina1aP07758 413 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 SftpdP50404 374 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Serpina1cQ00896 412 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Serpina1dQ00897 413 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Rnf139Q7TMV1 668 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Rpf1Q7TND5 349 aaKnown RBP13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Pcdhb7Q8CDY9 829 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Sapcd2Q9D818 391 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 XkQ9QXY7 446 aa13.33□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Sec14l1A8Y5H7 715 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Gm10436L7N1Y3 520 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Serpinb3dQ6UKZ0 387 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Tyw3Q8BSA9 257 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Cyp4f14Q9EP75 524 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 SmapQ9R0P4 181 aaKnown RBP13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Usp10P52479 792 aaKnown RBP13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Rps6P62754 249 aaKnown RBP13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Map4k1P70218 827 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Znf367Q0VDT2 340 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 PrcpQ7TMR0 491 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 RubcnQ80U62 956 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Tmem39bQ810L4 492 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Serpinb10Q8K1K6 397 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Iqsec1Q8R0S2 961 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Dis3Q9CSH3 958 aaKnown RBP13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Rasgef1cQ9D300 466 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 TyrobpO54885 114 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 PrlP06879 226 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 OgdhQ60597 1023 aaKnown RBP13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 SnrpaQ62189 287 aaKnown RBP13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Q6GQV0 436 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Znf12Q7TSI0 686 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Lrrc4cQ8C031 640 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Tdrd7Q8K1H1 1086 aaKnown RBP13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 WaslQ91YD9 501 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Usp26Q99MX1 835 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 MrrfQ9D6S7 262 aaKnown RBP13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Scyl3Q9DBQ7 735 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Ppp1r36D3Z0R2 411 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Cdh16O88338 830 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Elk3P41971 409 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Cul4aQ3TCH7 759 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Ceacam5Q3UKK2 947 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Ppp4r3cQ3V0Y1 813 aa13.32□□□□□ -0.28
Clcn3-201ENSMUST00000004430 Scarf1Q5ND28 820 aa13.32□□□□□ -0.28
Retrieved 100 of 22,080 RNA–protein pairs in 48.8 ms