Protein–RNA interactions for Protein: Q3UMB5

Smcr8, Guanine nucleotide exchange protein SMCR8, mousemouse

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smcr8Q3UMB5 Gm25239-201ENSMUST00000174915 86 ntBASIC41.21■■■■■ 4.19
Smcr8Q3UMB5 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.12■■■■□ 3.69
Smcr8Q3UMB5 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
Smcr8Q3UMB5 Gm15042-201ENSMUST00000120212 883 ntBASIC36.01■■■■□ 3.36
Smcr8Q3UMB5 Gm24109-201ENSMUST00000175489 103 ntBASIC35.68■■■■□ 3.3
Smcr8Q3UMB5 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC35.31■■■■□ 3.24
Smcr8Q3UMB5 Gm15045-201ENSMUST00000117359 883 ntBASIC35.19■■■■□ 3.22
Smcr8Q3UMB5 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
Smcr8Q3UMB5 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC34.78■■■■□ 3.16
Smcr8Q3UMB5 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
Smcr8Q3UMB5 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC34.64■■■■□ 3.14
Smcr8Q3UMB5 Gm23366-201ENSMUST00000175022 89 ntBASIC34.43■■■■□ 3.1
Smcr8Q3UMB5 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
Smcr8Q3UMB5 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC34.16■■■■□ 3.06
Smcr8Q3UMB5 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
Smcr8Q3UMB5 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
Smcr8Q3UMB5 AC153911.1-202ENSMUST00000218534 1034 ntBASIC33.32■■■□□ 2.92
Smcr8Q3UMB5 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.27■■■□□ 2.92
Smcr8Q3UMB5 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC33.24■■■□□ 2.91
Smcr8Q3UMB5 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.23■■■□□ 2.91
Smcr8Q3UMB5 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.1■■■□□ 2.89
Smcr8Q3UMB5 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
Smcr8Q3UMB5 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC32.97■■■□□ 2.87
Smcr8Q3UMB5 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.81■■■□□ 2.84
Smcr8Q3UMB5 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
Smcr8Q3UMB5 Psd-208ENSMUST00000224556 2034 ntBASIC32.8■■■□□ 2.84
Smcr8Q3UMB5 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
Smcr8Q3UMB5 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.78■■■□□ 2.84
Smcr8Q3UMB5 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
Smcr8Q3UMB5 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
Smcr8Q3UMB5 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Smcr8Q3UMB5 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC32.59■■■□□ 2.81
Smcr8Q3UMB5 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.55■■■□□ 2.8
Smcr8Q3UMB5 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC32.52■■■□□ 2.8
Smcr8Q3UMB5 Gm25238-201ENSMUST00000174914 89 ntBASIC32.52■■■□□ 2.8
Smcr8Q3UMB5 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
Smcr8Q3UMB5 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.32■■■□□ 2.76
Smcr8Q3UMB5 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC32.2■■■□□ 2.75
Smcr8Q3UMB5 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31.97■■■□□ 2.71
Smcr8Q3UMB5 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC31.88■■■□□ 2.69
Smcr8Q3UMB5 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Smcr8Q3UMB5 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC31.73■■■□□ 2.67
Smcr8Q3UMB5 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
Smcr8Q3UMB5 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
Smcr8Q3UMB5 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Smcr8Q3UMB5 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Smcr8Q3UMB5 Gm27325-201ENSMUST00000175467 74 ntBASIC31.54■■■□□ 2.64
Smcr8Q3UMB5 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Smcr8Q3UMB5 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
Smcr8Q3UMB5 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC31.49■■■□□ 2.63
Smcr8Q3UMB5 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC31.45■■■□□ 2.62
Smcr8Q3UMB5 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
Smcr8Q3UMB5 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.37■■■□□ 2.61
Smcr8Q3UMB5 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC31.36■■■□□ 2.61
Smcr8Q3UMB5 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
Smcr8Q3UMB5 Gm25262-201ENSMUST00000174934 133 ntBASIC31.18■■■□□ 2.58
Smcr8Q3UMB5 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.15■■■□□ 2.58
Smcr8Q3UMB5 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.12■■■□□ 2.57
Smcr8Q3UMB5 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
Smcr8Q3UMB5 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
Smcr8Q3UMB5 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Smcr8Q3UMB5 Rab21-202ENSMUST00000218831 843 ntBASIC30.98■■■□□ 2.55
Smcr8Q3UMB5 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC30.9■■■□□ 2.54
Smcr8Q3UMB5 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Smcr8Q3UMB5 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Smcr8Q3UMB5 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
Smcr8Q3UMB5 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.78■■■□□ 2.52
Smcr8Q3UMB5 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
Smcr8Q3UMB5 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
Smcr8Q3UMB5 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC30.64■■■□□ 2.5
Smcr8Q3UMB5 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC30.63■■■□□ 2.49
Smcr8Q3UMB5 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
Smcr8Q3UMB5 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC30.6■■■□□ 2.49
Smcr8Q3UMB5 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC30.59■■■□□ 2.49
Smcr8Q3UMB5 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC30.58■■■□□ 2.49
Smcr8Q3UMB5 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.49
Smcr8Q3UMB5 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Smcr8Q3UMB5 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Smcr8Q3UMB5 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC30.55■■■□□ 2.48
Smcr8Q3UMB5 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
Smcr8Q3UMB5 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
Smcr8Q3UMB5 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Smcr8Q3UMB5 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
Smcr8Q3UMB5 Gm10524-201ENSMUST00000181931 1893 ntBASIC30.46■■■□□ 2.47
Smcr8Q3UMB5 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC30.44■■■□□ 2.46
Smcr8Q3UMB5 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
Smcr8Q3UMB5 Gm26115-201ENSMUST00000175605 87 ntBASIC30.4■■■□□ 2.46
Smcr8Q3UMB5 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
Smcr8Q3UMB5 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Smcr8Q3UMB5 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Smcr8Q3UMB5 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
Smcr8Q3UMB5 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
Smcr8Q3UMB5 Gm8109-201ENSMUST00000194076 746 ntBASIC30.24■■■□□ 2.43
Smcr8Q3UMB5 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.24■■■□□ 2.43
Smcr8Q3UMB5 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
Smcr8Q3UMB5 CT025624.2-201ENSMUST00000223609 1909 ntBASIC30.22■■■□□ 2.43
Smcr8Q3UMB5 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
Smcr8Q3UMB5 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC30.18■■■□□ 2.42
Smcr8Q3UMB5 Gm42596-201ENSMUST00000196305 1958 ntBASIC30.16■■■□□ 2.42
Smcr8Q3UMB5 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.1■■■□□ 2.41
Retrieved 100 of 76,532 protein–RNA pairs in 72.1 ms