RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	FSF1	Q12029	327 aa	Known RBP	3.1	□□□□□ -1.91
VMA22	YHR060W	RAD50	P12753	1312 aa		3.1	□□□□□ -1.91
VMA22	YHR060W	RPL26A	P05743	127 aa	Known RBP	3.09	□□□□□ -1.91
VMA22	YHR060W	RAD6	P06104	172 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	HSP30	P25619	332 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	YBR220C	P38318	560 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	YER181C	P40097	107 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	YNL200C	P40165	246 aa	Known RBP	3.09	□□□□□ -1.91
VMA22	YHR060W	FIP1	P45976	327 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	EAF6	P47128	113 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	SBH1	P52870	82 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	DOC1	P53068	250 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	RPL26B	P53221	127 aa	Known RBP	3.09	□□□□□ -1.91
VMA22	YHR060W	CAB4	P53332	305 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	SDH7	Q04401	133 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	NKP2	Q06162	153 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	SLO1	Q3E784	85 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	RIB3	Q99258	208 aa		3.09	□□□□□ -1.91
VMA22	YHR060W	TRM3	Q07527	1436 aa		3.09	□□□□□ -1.92
VMA22	YHR060W	RPS23A	P0CX29	145 aa	Known RBP	3.08	□□□□□ -1.92
VMA22	YHR060W	RPS23B	P0CX30	145 aa		3.08	□□□□□ -1.92
VMA22	YHR060W	YHR180W	P38868	163 aa		3.08	□□□□□ -1.92
VMA22	YHR060W	SPC25	P40014	221 aa		3.08	□□□□□ -1.92
VMA22	YHR060W	RPL33B	P41056	107 aa	Known RBP	3.08	□□□□□ -1.92
VMA22	YHR060W	APS3	P47064	194 aa		3.08	□□□□□ -1.92
VMA22	YHR060W	YGL193C	P53097	103 aa		3.08	□□□□□ -1.92
VMA22	YHR060W	CNL1	Q06333	122 aa		3.08	□□□□□ -1.92
VMA22	YHR060W	ATO3	Q12359	275 aa		3.08	□□□□□ -1.92
VMA22	YHR060W	TIR1	P10863	254 aa		3.07	□□□□□ -1.92
VMA22	YHR060W	GPI2	P46961	280 aa		3.07	□□□□□ -1.92
VMA22	YHR060W	PIR5	P46999	287 aa		3.07	□□□□□ -1.92
VMA22	YHR060W	SLM2	P53955	656 aa		3.07	□□□□□ -1.92
VMA22	YHR060W	CGI121	Q03705	181 aa	Known RBP	3.07	□□□□□ -1.92
VMA22	YHR060W	FMN1	Q03778	218 aa		3.07	□□□□□ -1.92
VMA22	YHR060W	GAL83	Q04739	417 aa		3.07	□□□□□ -1.92
VMA22	YHR060W	ATG40	Q99325	256 aa		3.07	□□□□□ -1.92
VMA22	YHR060W	FYV4	P38783	130 aa	Predicted RBP	3.06	□□□□□ -1.92
VMA22	YHR060W	HTD2	P38790	280 aa	Known RBP	3.06	□□□□□ -1.92
VMA22	YHR060W	CIS3	P47001	227 aa		3.06	□□□□□ -1.92
VMA22	YHR060W	RCF2	P53721	224 aa		3.06	□□□□□ -1.92
VMA22	YHR060W	YMR253C	Q04835	414 aa		3.06	□□□□□ -1.92
VMA22	YHR060W	FRQ1	Q06389	190 aa		3.06	□□□□□ -1.92
VMA22	YHR060W	SYM1	Q06563	197 aa		3.06	□□□□□ -1.92
VMA22	YHR060W	WIP1	Q2V2P8	89 aa		3.06	□□□□□ -1.92
VMA22	YHR060W	SRP21	P32342	167 aa		3.05	□□□□□ -1.92
VMA22	YHR060W	RPS20	P38701	121 aa	Known RBP	3.05	□□□□□ -1.92
VMA22	YHR060W	VMA7	P39111	118 aa		3.05	□□□□□ -1.92
VMA22	YHR060W	YER135C	P40082	130 aa		3.05	□□□□□ -1.92
VMA22	YHR060W	RIO2	P40160	425 aa	Known RBP	3.05	□□□□□ -1.92
VMA22	YHR060W	FCY1	Q12178	158 aa		3.05	□□□□□ -1.92
VMA22	YHR060W	ATP20	Q12233	115 aa		3.05	□□□□□ -1.92
VMA22	YHR060W	RPO41	P13433	1351 aa	Known RBP	3.04	□□□□□ -1.92
VMA22	YHR060W	SOD1	P00445	154 aa	Known RBP	3.04	□□□□□ -1.92
VMA22	YHR060W	KRE1	P17260	313 aa		3.04	□□□□□ -1.92
VMA22	YHR060W	MRPL24	P36525	258 aa	Predicted RBP	3.04	□□□□□ -1.92
VMA22	YHR060W	YBR209W	P38311	105 aa		3.04	□□□□□ -1.92
VMA22	YHR060W	ERV15	P38312	142 aa		3.04	□□□□□ -1.92
VMA22	YHR060W	TVP23	P38962	199 aa		3.04	□□□□□ -1.92
VMA22	YHR060W	TIR3	P40552	269 aa		3.04	□□□□□ -1.92
VMA22	YHR060W	YGR017W	P53210	297 aa		3.04	□□□□□ -1.92
VMA22	YHR060W	TIM8	P57744	87 aa		3.04	□□□□□ -1.92
VMA22	YHR060W	Q0144	Q9ZZW2	109 aa		3.04	□□□□□ -1.92
VMA22	YHR060W	RAS2	P01120	322 aa	Known RBP	3.03	□□□□□ -1.92
VMA22	YHR060W	PHO85	P17157	305 aa		3.03	□□□□□ -1.92
VMA22	YHR060W	YNL217W	P40152	326 aa		3.03	□□□□□ -1.92
VMA22	YHR060W	YNR062C	P53748	327 aa		3.03	□□□□□ -1.92
VMA22	YHR060W	PRP11	Q07350	266 aa	Predicted RBP	3.03	□□□□□ -1.92
VMA22	YHR060W	PHO13	P19881	312 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	FMT1	P32785	401 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	FZF1	P32805	299 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	CPR5	P35176	225 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	SHB17	P36136	271 aa	Known RBP	3.02	□□□□□ -1.93
VMA22	YHR060W	PAM17	P36147	197 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	RRT1	P38192	103 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	YEL028W	P39989	153 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	YER084W	P40057	128 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	GLC8	P41818	229 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	MPC3	P53311	146 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	CUE4	Q04201	117 aa	Predicted RBP	3.02	□□□□□ -1.93
VMA22	YHR060W	RRT7	Q07829	113 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	3.02	□□□□□ -1.93	not detected
VMA22	YHR060W	FYV12	Q08559	129 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	SPC3	Q12133	184 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	CCH1	P50077	2039 aa		3.02	□□□□□ -1.93
VMA22	YHR060W	GPA2	P10823	449 aa		3.01	□□□□□ -1.93
VMA22	YHR060W	MRP49	P32388	137 aa		3.01	□□□□□ -1.93
VMA22	YHR060W	SUI1	P32911	108 aa	Known RBP	3.01	□□□□□ -1.93
VMA22	YHR060W	YEL073C	P39974	107 aa		3.01	□□□□□ -1.93
VMA22	YHR060W	YNL033W	P53964	284 aa		3.01	□□□□□ -1.93
VMA22	YHR060W	YNL019C	P53975	284 aa		3.01	□□□□□ -1.93
VMA22	YHR060W	LIP1	Q03579	150 aa		3.01	□□□□□ -1.93
VMA22	YHR060W	YPR195C	Q06594	109 aa		3.01	□□□□□ -1.93
VMA22	YHR060W	YPR096C	O13587	100 aa		3	□□□□□ -1.93
VMA22	YHR060W	HSP12	P22943	109 aa	Known RBP	3	□□□□□ -1.93
VMA22	YHR060W	MIG1	P27705	504 aa		3	□□□□□ -1.93
VMA22	YHR060W	PEX4	P29340	183 aa		3	□□□□□ -1.93
VMA22	YHR060W	AGA2	P32781	87 aa		3	□□□□□ -1.93
VMA22	YHR060W	YBL010C	P32788	280 aa		3	□□□□□ -1.93
VMA22	YHR060W	SVP26	P38869	228 aa		3	□□□□□ -1.93
VMA22	YHR060W	AYR1	P40471	297 aa		3	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 26.3 ms