RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W ACA1P39970 489 aa2.84□□□□□ -1.95
USE1YGL098W YEL068CP39977 110 aa2.84□□□□□ -1.95
USE1YGL098W YND1P40009 630 aa2.84□□□□□ -1.95
USE1YGL098W XBP1P40489 647 aa2.84□□□□□ -1.95
USE1YGL098W CDC1P40986 491 aa2.84□□□□□ -1.95
USE1YGL098W GPI2P46961 280 aa2.84□□□□□ -1.95
USE1YGL098W YJL028WP47062 111 aa2.84□□□□□ -1.95
USE1YGL098W BNA1P47096 177 aa2.84□□□□□ -1.95
USE1YGL098W ARP3P47117 449 aaKnown RBP2.84□□□□□ -1.95
USE1YGL098W BNA2P47125 453 aa2.84□□□□□ -1.95
USE1YGL098W YGL118CP53132 145 aa2.84□□□□□ -1.95
USE1YGL098W TGL2P54857 326 aa2.84□□□□□ -1.95
USE1YGL098W UBC7Q02159 165 aa2.84□□□□□ -1.95
USE1YGL098W NAT3Q06504 195 aa2.84□□□□□ -1.95
USE1YGL098W STP4Q07351 490 aa2.84□□□□□ -1.95
USE1YGL098W LDS2Q08218 356 aa2.84□□□□□ -1.95
USE1YGL098W YOL073CQ08232 322 aa2.84□□□□□ -1.95
USE1YGL098W SMT3Q12306 101 aaKnown RBP2.84□□□□□ -1.95
USE1YGL098W CYC3P06182 269 aa2.83□□□□□ -1.96
USE1YGL098W MDH2P22133 377 aa2.83□□□□□ -1.96
USE1YGL098W NFS1P25374 497 aa2.83□□□□□ -1.96
USE1YGL098W IMG2P25642 146 aaPredicted RBP2.83□□□□□ -1.96
USE1YGL098W RFA3P26755 122 aaKnown RBP2.83□□□□□ -1.96
USE1YGL098W TOA2P32774 122 aa2.83□□□□□ -1.96
USE1YGL098W SWD2P36104 329 aaPredicted RBP2.83□□□□□ -1.96
USE1YGL098W YHR097CP38809 366 aaKnown RBP2.83□□□□□ -1.96
USE1YGL098W SRP14P38985 146 aa2.83□□□□□ -1.96
USE1YGL098W TIF34P40217 347 aaKnown RBP2.83□□□□□ -1.96
USE1YGL098W BTT1P40314 149 aaPredicted RBP2.83□□□□□ -1.96
USE1YGL098W YIL169CP40442 995 aa2.83□□□□□ -1.96
USE1YGL098W YJL213WP40896 331 aa2.83□□□□□ -1.96
USE1YGL098W OST2P46964 130 aa2.83□□□□□ -1.96
USE1YGL098W YDL186WP48568 277 aa2.83□□□□□ -1.96
USE1YGL098W YIP3P53633 176 aa2.83□□□□□ -1.96
USE1YGL098W YMR310CQ04867 317 aaPredicted RBP2.83□□□□□ -1.96
USE1YGL098W RSF1Q05043 376 aa2.83□□□□□ -1.96
USE1YGL098W SNT309Q06091 175 aaPredicted RBP2.83□□□□□ -1.96
USE1YGL098W SWT1Q12104 458 aa2.83□□□□□ -1.96
USE1YGL098W ATO3Q12359 275 aa2.83□□□□□ -1.96
USE1YGL098W POM34Q12445 299 aa2.83□□□□□ -1.96
USE1YGL098W YCR024C-BQ3E7Z8 88 aa2.83□□□□□ -1.96
USE1YGL098W ATG40Q99325 256 aa2.83□□□□□ -1.96
USE1YGL098W UBA3Q99344 299 aa2.83□□□□□ -1.96
USE1YGL098W RPS28BP0C0X0 67 aaKnown RBP2.82□□□□□ -1.96
USE1YGL098W COX10P21592 462 aa2.82□□□□□ -1.96
USE1YGL098W QCR9P22289 66 aa2.82□□□□□ -1.96
USE1YGL098W YCR100CP25606 316 aa2.82□□□□□ -1.96
USE1YGL098W SRP21P32342 167 aa2.82□□□□□ -1.96
USE1YGL098W ARO4P32449 370 aaKnown RBP2.82□□□□□ -1.96
USE1YGL098W NHP2P32495 156 aaPredicted RBP2.82□□□□□ -1.96
USE1YGL098W KKQ8P36004 724 aa2.82□□□□□ -1.96
USE1YGL098W YAL037WP39728 267 aa2.82□□□□□ -1.96
USE1YGL098W YEL073CP39974 107 aa2.82□□□□□ -1.96
USE1YGL098W CYB5P40312 120 aa2.82□□□□□ -1.96
USE1YGL098W ATF1P40353 525 aa2.82□□□□□ -1.96
USE1YGL098W YIL059CP40520 121 aa2.82□□□□□ -1.96
USE1YGL098W SHR5P41912 237 aa2.82□□□□□ -1.96
USE1YGL098W YCH1P42937 148 aa2.82□□□□□ -1.96
USE1YGL098W YFL054CP43549 646 aa2.82□□□□□ -1.96
USE1YGL098W CTK2P46962 323 aa2.82□□□□□ -1.96
USE1YGL098W YJR096WP47137 282 aa2.82□□□□□ -1.96
USE1YGL098W TOS2P50078 622 aa2.82□□□□□ -1.96
USE1YGL098W UBC9P50623 157 aaPredicted RBP2.82□□□□□ -1.96
USE1YGL098W YGL235WP53071 178 aa2.82□□□□□ -1.96
USE1YGL098W OGG1P53397 376 aaPredicted RBP2.82□□□□□ -1.96
USE1YGL098W YLR152CP54072 576 aa2.82□□□□□ -1.96
USE1YGL098W RCR2Q03446 210 aaKnown RBP2.82□□□□□ -1.96
USE1YGL098W YMR206WQ03695 313 aa2.82□□□□□ -1.96
USE1YGL098W YPL264CQ08980 353 aa2.82□□□□□ -1.96
USE1YGL098W RPS28AQ3E7X9 67 aaPredicted RBP2.82□□□□□ -1.96
USE1YGL098W SCS22Q6Q595 175 aa2.82□□□□□ -1.96
USE1YGL098W MRPL20P22354 195 aaPredicted RBP2.81□□□□□ -1.96
USE1YGL098W MRS4P23500 304 aa2.81□□□□□ -1.96
USE1YGL098W AHT1P29589 182 aa2.81□□□□□ -1.96
USE1YGL098W AGA2P32781 87 aa2.81□□□□□ -1.96
USE1YGL098W CSE2P33308 149 aa2.81□□□□□ -1.96
USE1YGL098W SGE1P33335 543 aa2.81□□□□□ -1.96
USE1YGL098W AUR1P36107 401 aaPredicted RBP2.81□□□□□ -1.96
USE1YGL098W SHB17P36136 271 aaKnown RBP2.81□□□□□ -1.96
USE1YGL098W YBR090CP38253 122 aa2.81□□□□□ -1.96
USE1YGL098W YBR184WP38299 523 aa2.81□□□□□ -1.96
USE1YGL098W YGP1P38616 354 aaKnown RBP2.81□□□□□ -1.96
USE1YGL098W ANS1P38832 159 aa2.81□□□□□ -1.96
USE1YGL098W ECM14P38836 430 aa2.81□□□□□ -1.96
USE1YGL098W AZF1P41696 914 aa2.81□□□□□ -1.96
USE1YGL098W SCS3P53012 380 aa2.81□□□□□ -1.96
USE1YGL098W GEP7P53171 287 aa2.81□□□□□ -1.96
USE1YGL098W MSO1P53604 210 aaKnown RBP2.81□□□□□ -1.96
USE1YGL098W NRG1Q03125 231 aa2.81□□□□□ -1.96
USE1YGL098W BET5Q03630 159 aa2.81□□□□□ -1.96
USE1YGL098W NUP53Q03790 475 aa2.81□□□□□ -1.96
USE1YGL098W YLR296WQ05898 108 aa2.81□□□□□ -1.96
USE1YGL098W STP3Q05937 343 aa2.81□□□□□ -1.96
USE1YGL098W PAM18Q07914 168 aa2.81□□□□□ -1.96
USE1YGL098W YOL029CQ08187 201 aa2.81□□□□□ -1.96
USE1YGL098W PRP46Q12417 451 aaPredicted RBP2.81□□□□□ -1.96
USE1YGL098W YKL023C-AQ2V2P3 75 aa2.81□□□□□ -1.96
USE1YGL098W HTL1Q9URQ5 78 aa2.81□□□□□ -1.96
USE1YGL098W YRF1-3P0CX14 1859 aa2.81□□□□□ -1.96
USE1YGL098W YRF1-7P0CX15 1859 aa2.81□□□□□ -1.96
Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms