RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeastyeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC48YDL126C SUR7P54003 302 aa3.9□□□□□ -1.78
CDC48YDL126C CTR3Q06686 241 aa3.9□□□□□ -1.78
CDC48YDL126C FSF1Q12029 327 aaKnown RBP3.9□□□□□ -1.78
CDC48YDL126C TPT1Q12272 230 aaKnown RBP3.9□□□□□ -1.78
CDC48YDL126C YPR064WQ12492 139 aa3.9□□□□□ -1.78
CDC48YDL126C HOM6P31116 359 aaKnown RBP3.9□□□□□ -1.79
CDC48YDL126C ATG18P43601 500 aa3.9□□□□□ -1.79
CDC48YDL126C YLR179CQ06252 201 aaKnown RBP3.9□□□□□ -1.79
CDC48YDL126C GAT3Q07928 141 aa3.9□□□□□ -1.79
CDC48YDL126C FRE7Q12333 620 aa3.9□□□□□ -1.79
CDC48YDL126C INO2P26798 304 aa3.89□□□□□ -1.79
CDC48YDL126C MKK1P32490 508 aa3.89□□□□□ -1.79
CDC48YDL126C RPL13BP40212 199 aaKnown RBP3.89□□□□□ -1.79
CDC48YDL126C PRM8P53174 237 aa3.89□□□□□ -1.79
CDC48YDL126C GMC1Q04399 608 aa3.89□□□□□ -1.79
CDC48YDL126C PBP4Q07362 185 aaKnown RBP3.89□□□□□ -1.79
CDC48YDL126C HNT3Q08702 217 aa3.89□□□□□ -1.79
CDC48YDL126C RAD28Q12021 506 aa3.89□□□□□ -1.79
CDC48YDL126C TIR4Q12218 487 aaPredicted RBP3.89□□□□□ -1.79
CDC48YDL126C YGL194C-AQ2V2P6 80 aa3.89□□□□□ -1.79
CDC48YDL126C ATG15P25641 520 aa3.89□□□□□ -1.79
CDC48YDL126C POP5P28005 173 aa3.89□□□□□ -1.79
CDC48YDL126C SPS18P32572 300 aa3.89□□□□□ -1.79
CDC48YDL126C UTR5P32630 166 aa3.89□□□□□ -1.79
CDC48YDL126C MTM1P53320 366 aa3.89□□□□□ -1.79
CDC48YDL126C RNH201P53942 307 aa3.89□□□□□ -1.79
CDC48YDL126C UBC7Q02159 165 aa3.89□□□□□ -1.79
CDC48YDL126C RDL1Q12305 139 aaKnown RBP3.89□□□□□ -1.79
CDC48YDL126C SIR2P06700 562 aa3.88□□□□□ -1.79
CDC48YDL126C PPH21P23594 369 aa3.88□□□□□ -1.79
CDC48YDL126C SRX1P36077 127 aa3.88□□□□□ -1.79
CDC48YDL126C SNU13P39990 126 aaKnown RBP3.88□□□□□ -1.79
CDC48YDL126C SYS1P41544 203 aa3.88□□□□□ -1.79
CDC48YDL126C SMM1P53720 384 aaKnown RBP3.88□□□□□ -1.79
CDC48YDL126C RHO4Q00246 291 aa3.88□□□□□ -1.79
CDC48YDL126C YPR098CQ06089 161 aa3.88□□□□□ -1.79
CDC48YDL126C YDL009CQ12210 107 aa3.88□□□□□ -1.79
CDC48YDL126C VPS13Q07878 3144 aa3.88□□□□□ -1.79
CDC48YDL126C UBI4P0CG63 381 aaKnown RBP3.88□□□□□ -1.79
CDC48YDL126C DOG1P38774 246 aa3.88□□□□□ -1.79
CDC48YDL126C MSL1P40567 111 aaPredicted RBP3.88□□□□□ -1.79
CDC48YDL126C OST3P48439 350 aa3.88□□□□□ -1.79
CDC48YDL126C AIM34Q03673 198 aa3.88□□□□□ -1.79
CDC48YDL126C MCH1Q07376 486 aa3.88□□□□□ -1.79
CDC48YDL126C FUN19P28003 413 aaPredicted RBP3.87□□□□□ -1.79
CDC48YDL126C FMP46P36141 133 aaKnown RBP3.87□□□□□ -1.79
CDC48YDL126C MOH1P38191 138 aa3.87□□□□□ -1.79
CDC48YDL126C YER079WP40052 210 aaKnown RBP3.87□□□□□ -1.79
CDC48YDL126C YIL152WP40455 235 aa3.87□□□□□ -1.79
CDC48YDL126C YIF1P53845 314 aaKnown RBP3.87□□□□□ -1.79
CDC48YDL126C SWS2P53937 143 aa3.87□□□□□ -1.79
CDC48YDL126C YMR320WQ04897 101 aa3.87□□□□□ -1.79
CDC48YDL126C HYP2P23301 157 aaKnown RBP3.87□□□□□ -1.79
CDC48YDL126C SKN1P33336 771 aa3.87□□□□□ -1.79
CDC48YDL126C PRY2P36110 329 aa3.87□□□□□ -1.79
CDC48YDL126C SLM6P38343 150 aa3.87□□□□□ -1.79
CDC48YDL126C LYS1P38998 373 aaRIP-Chip data3.87□□□□□ -1.79not detected
CDC48YDL126C CRZ1P53968 678 aa3.87□□□□□ -1.79
CDC48YDL126C YOL163WP0CF20 169 aa3.86□□□□□ -1.79
CDC48YDL126C PHS1P40857 217 aa3.86□□□□□ -1.79
CDC48YDL126C YJR015WP47090 510 aa3.86□□□□□ -1.79
CDC48YDL126C LST7P53237 242 aa3.86□□□□□ -1.79
CDC48YDL126C VHT1P53241 593 aa3.86□□□□□ -1.79
CDC48YDL126C GRX5Q02784 150 aa3.86□□□□□ -1.79
CDC48YDL126C TMA23Q03525 211 aa3.86□□□□□ -1.79
CDC48YDL126C RAV2Q03956 351 aa3.86□□□□□ -1.79
CDC48YDL126C YOR385WQ08909 290 aa3.86□□□□□ -1.79
CDC48YDL126C BSC1Q12140 328 aa3.86□□□□□ -1.79
CDC48YDL126C RPL40AP0CH08 128 aaKnown RBP3.86□□□□□ -1.79
CDC48YDL126C RPL40BP0CH09 128 aaKnown RBP3.86□□□□□ -1.79
CDC48YDL126C CTA1P15202 515 aa3.86□□□□□ -1.79
CDC48YDL126C YCR006CP25350 157 aa3.86□□□□□ -1.79
CDC48YDL126C QRI5P32344 111 aa3.86□□□□□ -1.79
CDC48YDL126C SHE2P36068 246 aaKnown RBP RIP-Chip data3.86□□□□□ -1.79not detected
CDC48YDL126C HPA3P39979 161 aa3.86□□□□□ -1.79
CDC48YDL126C XPT1P47165 209 aa3.86□□□□□ -1.79
CDC48YDL126C MIC26P50087 233 aa3.86□□□□□ -1.79
CDC48YDL126C THG1P53215 237 aaKnown RBP3.86□□□□□ -1.79
CDC48YDL126C DAD3P69850 94 aa3.86□□□□□ -1.79
CDC48YDL126C PET191Q02772 108 aa3.86□□□□□ -1.79
CDC48YDL126C YML079WQ03629 201 aa3.86□□□□□ -1.79
CDC48YDL126C TAZ1Q06510 381 aa3.86□□□□□ -1.79
CDC48YDL126C PRR2Q12310 699 aa3.86□□□□□ -1.79
CDC48YDL126C YIL134C-AQ45U18 67 aa3.86□□□□□ -1.79
CDC48YDL126C MRP17P28778 131 aa3.85□□□□□ -1.79
CDC48YDL126C EMC5P40540 141 aa3.85□□□□□ -1.79
CDC48YDL126C PAU5P43575 122 aa3.85□□□□□ -1.79
CDC48YDL126C CIS3P47001 227 aa3.85□□□□□ -1.79
CDC48YDL126C TAD2P47058 250 aa3.85□□□□□ -1.79
CDC48YDL126C UTP15Q04305 513 aaKnown RBP3.85□□□□□ -1.79
CDC48YDL126C YLR030WQ07967 263 aa3.85□□□□□ -1.79
CDC48YDL126C MCP1Q12106 302 aa3.85□□□□□ -1.79
CDC48YDL126C RAX2Q12465 1220 aa3.85□□□□□ -1.79
CDC48YDL126C COX19Q3E731 98 aa3.85□□□□□ -1.79
CDC48YDL126C MBF1O14467 151 aaKnown RBP3.85□□□□□ -1.79
CDC48YDL126C TRR1P29509 319 aaKnown RBP3.85□□□□□ -1.79
CDC48YDL126C RPL14BP38754 138 aaKnown RBP3.85□□□□□ -1.79
CDC48YDL126C YER076CP40049 302 aa3.85□□□□□ -1.79
CDC48YDL126C ERJ5P43613 295 aaPredicted RBP3.85□□□□□ -1.79
CDC48YDL126C CIN2P46670 268 aa3.85□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 79.4 ms