RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 FDXACB1Q9BRP7 624 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TRMT61BQ9BVS5 477 aaKnown RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 CINPQ9BW66 212 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 STRADBQ9C0K7 418 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TMEM117Q9H0C3 514 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 RBSNQ9H1K0 784 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 STOML1Q9UBI4 398 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 GULP1Q9UBP9 304 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 SUSD2Q9UGT4 822 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 NMT2O60551 498 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 PLEKHA8P1O95397 391 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 CPP00450 1065 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 EIF4BP23588 611 aaKnown RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 FSHRP23945 695 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 NAMPTP43490 491 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 VAMP7P51809 220 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 PTPN11Q06124 597 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 NCAPHQ15003 741 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 DUSP28Q4G0W2 176 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 SLC27A1Q6PCB7 646 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 KCTD17Q8N5Z5 321 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 ATP11CQ8NB49 1132 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 USP33Q8TEY7 942 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TMA16Q96EY4 203 aaKnown RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 DHTKD1Q96HY7 919 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 FAM129AQ9BZQ8 928 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 WDR41Q9HAD4 459 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 ADAM22Q9P0K1 906 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 WDR35Q9P2L0 1181 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 SYNPO2Q9UMS6 1093 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 ARHGAP23Q9P227 1491 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 UBA6A0AVT1 1052 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 SNTNA6NMZ2 147 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 PFKFB2O60825 505 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 LGALS2P05162 132 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 CD52P31358 61 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 VAV2P52735 878 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 POLR2FP61218 127 aaKnown RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 CNTN2Q02246 1040 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TOMM20Q15388 145 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 PCNX4Q63HM2 1172 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 CATSPER3Q86XQ3 398 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 NPAS4Q8IUM7 802 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 IGSF22Q8N9C0 903 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 LEMD2Q8NC56 503 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 HELQQ8TDG4 1101 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 BADQ92934 168 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF512BQ96KM6 892 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 C1QTNF1Q9BXJ1 281 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TRIM55Q9BYV6 548 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TYW1Q9NV66 732 aaKnown RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 I3L4J1 428 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 AP3B1O00203 1094 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 NFKBIEO00221 500 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 FOXN1O15353 648 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 RRP8O43159 456 aaKnown RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 ONECUT3O60422 494 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 MTA2O94776 668 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 RHOCP08134 193 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 SMIM10L2AP0DMW4 78 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 SMIM10L2BP0DMW5 78 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 RASA1P20936 1047 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 CRYBB1P53674 252 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 IMPG1Q17R60 797 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 FBXO18Q8NFZ0 1043 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 MRRFQ96E11 262 aaKnown RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 KCNK9Q9NPC2 374 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 VPS51Q9UID3 782 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 DNAJC12Q9UKB3 198 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 PER2O15055 1255 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 ACO1P21399 889 aaKnown RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 ACOT2P49753 483 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 MTFR1Q15390 333 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 PRPF38BQ5VTL8 546 aaKnown RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 SLC20A1Q8WUM9 679 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 GDAP1L1Q96MZ0 367 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 SUN2Q9UH99 717 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF510Q9Y2H8 683 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TBC1D3DA0A087WVF3 549 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TBC1D3IA0A087WXS9 549 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TBC1D3EA0A087X179 549 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TBC1D3KA0A087X1G2 549 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TBC1D3FA6NER0 549 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 LRRIQ3A6PVS8 624 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TBC1D3LB9A6J9 549 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 OGTO15294 1046 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 ARHGAP6O43182 974 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 PSMD3O43242 534 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TBC1D3HP0C7X1 549 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 SKILP12757 684 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 GNA15P30679 374 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 HOXC8P31273 242 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 WDR45BQ5MNZ6 344 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 GPR158Q5T848 1215 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 KRT39Q6A163 491 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TBC1D3GQ6DHY5 549 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TBC1D3CQ6IPX1 549 aa5.27□□□□□ -1.57
SCN1A-218ENST00000640036 TMC5Q6UXY8 1006 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms