RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 OSBPL7Q9BZF2 842 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CRISPLD2Q9H0B8 497 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CDC42EP4Q9H3Q1 356 aaKnown RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 BCAS3Q9H6U6 928 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 RXFP1Q9HBX9 757 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 USH1CQ9Y6N9 552 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 OTOFQ9HC10 1997 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 E7ENQ6 273 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 PI4K2BG5E9Z4 385 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 EML1O00423 815 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 FSCN2O14926 492 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CYP26A1O43174 497 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 ZBED4O75132 1171 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 TCEA3O75764 348 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 WFS1O76024 890 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 LYPLA2O95372 231 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 DLATP10515 647 aaKnown RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 ALAS1P13196 640 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 RAG1P15918 1043 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 TBXAS1P24557 533 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 FLT3P36888 993 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CAP1Q01518 475 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CCDC15Q0P6D6 951 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 AUHQ13825 339 aaKnown RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CCDC6Q16204 474 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 QPCTQ16769 361 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CLEC16AQ2KHT3 1053 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 TNFAIP8L3Q5GJ75 292 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 SMYD5Q6GMV2 418 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 MAEAQ7L5Y9 396 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 EPS8L3Q8TE67 593 aaKnown RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 EPS8L1Q8TE68 723 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 SLC20A1Q8WUM9 679 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 SHC3Q92529 594 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 NKD2Q969F2 451 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CCDC127Q96BQ5 260 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 TBC1D31Q96DN5 1066 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CDHR1Q96JP9 859 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 LMAN2LQ9H0V9 348 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 DNAJC18Q9H819 358 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 VPS37BQ9H9H4 285 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 DDX56Q9NY93 547 aaKnown RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 GRHL1Q9NZI5 618 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 IP6K2Q9UHH9 426 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 RPL26L1Q9UNX3 145 aaKnown RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 SLC12A4Q9UP95 1085 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 PCDHB2Q9Y5E7 798 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 RASA4BC9J798 803 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CLDN3O15551 220 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 RASA4O43374 803 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 LDHAP00338 332 aaKnown RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CALB1P05937 261 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CYP11B1P15538 503 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 NAT1P18440 290 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 PIK3CAP42336 1068 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 LIG4P49917 911 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 GPC3P51654 580 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 SNAP25P60880 206 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 GCNT1Q02742 428 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 PTP4A2Q12974 167 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 SNX1Q13596 522 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 RRP1BQ14684 758 aaKnown RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 TMED2Q15363 201 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 SNRNP35Q16560 246 aaKnown RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CCNG2Q16589 344 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 IZUMO3Q5VZ72 239 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 RNF43Q68DV7 783 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 SLFN12LQ6IEE8 588 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 ZNF746Q6NUN9 644 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 ZDHHC24Q6UX98 284 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 TRIM42Q8IWZ5 723 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 GPD1LQ8N335 351 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 TEX9Q8N6V9 391 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 TTC13Q8NBP0 860 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 PPFIBP2Q8ND30 876 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 TRPM4Q8TD43 1214 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 TMEM174Q8WUU8 243 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 CKAP2Q8WWK9 683 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 ALG3Q92685 438 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 RNF25Q96BH1 459 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 ALKBH8Q96BT7 664 aaKnown RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 VCPIP1Q96JH7 1222 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 ZNF317Q96PQ6 595 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 IQCGQ9H095 443 aaKnown RBP4.21□□□□□ -1.74
SCN1A-214ENST00000637038 FGFR1OP2Q9NVK5 253 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 LGALS13Q9UHV8 139 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 ZBTB21Q9ULJ3 1066 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 USP20Q9Y2K6 914 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 TMX2Q9Y320 296 aa4.21□□□□□ -1.74
SCN1A-214ENST00000637038 IGLV3-22A0A075B6J6 115 aa4.2□□□□□ -1.74
SCN1A-214ENST00000637038 BACH1O14867 736 aa4.2□□□□□ -1.74
SCN1A-214ENST00000637038 HNRNPDLO14979 420 aaKnown RBP4.2□□□□□ -1.74
SCN1A-214ENST00000637038 ECE2O60344 883 aa4.2□□□□□ -1.74
SCN1A-214ENST00000637038 SHBGP04278 402 aa4.2□□□□□ -1.74
SCN1A-214ENST00000637038 RARAP10276 462 aa4.2□□□□□ -1.74
SCN1A-214ENST00000637038 PYGMP11217 842 aa4.2□□□□□ -1.74
SCN1A-214ENST00000637038 GARTP22102 1010 aa4.2□□□□□ -1.74
SCN1A-214ENST00000637038 POLR2BP30876 1174 aaKnown RBP4.2□□□□□ -1.74
SCN1A-214ENST00000637038 AP3M2P53677 418 aa4.2□□□□□ -1.74
SCN1A-214ENST00000637038 ITGA8P53708 1063 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms