RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SAMD7Q7Z3H4 446 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 PRUNE1Q86TP1 453 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 SRRM1Q8IYB3 904 aaKnown RBP13.5□□□□□ -0.25
LINC00540-203ENST00000631321 NKD2Q969F2 451 aaPredicted RBP13.5□□□□□ -0.25
LINC00540-203ENST00000631321 TGS1Q96RS0 853 aaKnown RBP13.5□□□□□ -0.25
LINC00540-203ENST00000631321 PCYT2Q99447 389 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 PIM2Q9P1W9 311 aa13.5□□□□□ -0.25
LINC00540-203ENST00000631321 hCG_1818297A0A087WSY0 165 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 SPDYE16A6NNV3 312 aaPredicted RBP13.49□□□□□ -0.25
LINC00540-203ENST00000631321 PI4K2BG5E9Z4 385 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 NDC80O14777 642 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 KRT10P13645 584 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 STX2P32856 288 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 VCPP55072 806 aaKnown RBP13.49□□□□□ -0.25
LINC00540-203ENST00000631321 NCALDP61601 193 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 BNIP1Q12981 228 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 RASA2Q15283 850 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 SCARA3Q6AZY7 606 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 CGB2Q6NT52 195 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 DNAJC24Q6P3W2 148 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 TRABD2AQ86V40 505 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 GLIS1Q8NBF1 620 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 GDAP1Q8TB36 358 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 GRAMD1AQ96CP6 724 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 TACO1Q9BSH4 297 aaKnown RBP13.49□□□□□ -0.25
LINC00540-203ENST00000631321 DDX56Q9NY93 547 aaKnown RBP13.49□□□□□ -0.25
LINC00540-203ENST00000631321 HOXC10Q9NYD6 342 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 GSTTP1A0A1W2PQM5 241 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 FAM47DPA6NHR8 397 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 MAGEB2O15479 319 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 ATP6V1G2O95670 118 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 CST3P01034 146 aaPredicted RBP13.49□□□□□ -0.25
LINC00540-203ENST00000631321 TAC1P20366 129 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 SLC8A1P32418 973 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 RDXP35241 583 aaKnown RBP13.49□□□□□ -0.25
LINC00540-203ENST00000631321 GMPSP49915 693 aaPredicted RBP13.49□□□□□ -0.25
LINC00540-203ENST00000631321 OGDHQ02218 1023 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 SF3A3Q12874 501 aaKnown RBP eCLIP13.49□□□□□ -0.25
LINC00540-203ENST00000631321 ACVR2BQ13705 512 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 PIGHQ14442 188 aaPredicted RBP13.49□□□□□ -0.25
LINC00540-203ENST00000631321 MTFR1Q15390 333 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 RNF43Q68DV7 783 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 TMEM35BQ8NCS4 154 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 CHST13Q8NET6 341 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 NIF3L1Q9GZT8 377 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 PPCSQ9HAB8 311 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 MLXIPLQ9NP71 852 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 SAYSD1Q9NPB0 183 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 NRBP2Q9NSY0 501 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 KLHL11Q9NVR0 708 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 TBK1Q9UHD2 729 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 PCDHGC3Q9UN70 934 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 PPME1Q9Y570 386 aa13.49□□□□□ -0.25
LINC00540-203ENST00000631321 DOCK5Q9H7D0 1870 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 RASA4BC9J798 803 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 F8VP50 259 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 ALOX15BO15296 676 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 PRPF4O43172 522 aaKnown RBP eCLIP13.48□□□□□ -0.25
LINC00540-203ENST00000631321 RASA4O43374 803 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 ITGAVP06756 1048 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 CDKN2BP42772 138 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 ARSEP51690 589 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 EFNA5P52803 228 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 ZNF268Q14587 947 aaPredicted RBP13.48□□□□□ -0.25
LINC00540-203ENST00000631321 RNASEH2BQ5TBB1 312 aaKnown RBP13.48□□□□□ -0.25
LINC00540-203ENST00000631321 CYP4F22Q6NT55 531 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 RPAINQ86UA6 219 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 DENND1AQ8TEH3 1009 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 MCEEQ96PE7 176 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 RXFP1Q9HBX9 757 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 PCDH9Q9HC56 1237 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 SHOC2Q9UQ13 582 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 ZNF148Q9UQR1 794 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 LOC285556D6RIA3 1793 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 NFKBIEO00221 500 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 MSCO60682 206 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 MAFO75444 373 aaPredicted RBP13.48□□□□□ -0.25
LINC00540-203ENST00000631321 TOM1L1O75674 476 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 ASMTLO95671 621 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 ZSCAN5DPP0CG00 497 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 NQO1P15559 274 aaKnown RBP13.48□□□□□ -0.25
LINC00540-203ENST00000631321 PECAM1P16284 738 aaPredicted RBP13.48□□□□□ -0.25
LINC00540-203ENST00000631321 EIF4BP23588 611 aaKnown RBP13.48□□□□□ -0.25
LINC00540-203ENST00000631321 FOXN2P32314 431 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 WDR4P57081 412 aaKnown RBP13.48□□□□□ -0.25
LINC00540-203ENST00000631321 IL9RQ01113 521 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 CCDC15Q0P6D6 951 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 FSTL1Q12841 308 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 TFDP3Q5H9I0 405 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 KAZNQ674X7 775 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 CDCA2Q69YH5 1023 aaPredicted RBP13.48□□□□□ -0.25
LINC00540-203ENST00000631321 RGS9BPQ6ZS82 235 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 POLNQ7Z5Q5 900 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 WDTC1Q8N5D0 677 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 NCAPGQ9BPX3 1015 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 PHACTR1Q9C0D0 580 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 ECT2Q9H8V3 914 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 CISHQ9NSE2 258 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 EFR3BQ9Y2G0 817 aa13.48□□□□□ -0.25
LINC00540-203ENST00000631321 LCTP09848 1927 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms