RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 FAM170AA1A519 330 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 THAP12O43422 761 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 FGFR1P11362 822 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 BRD2P25440 801 aaKnown RBP15.21■□□□□ 0.02
USP39-220ENST00000613444 NDST1P52848 882 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 ORC1Q13415 861 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 SV2CQ496J9 727 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 UBE2Q1Q7Z7E8 422 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 SECISBP2LQ93073 1101 aaKnown RBP15.21■□□□□ 0.02
USP39-220ENST00000613444 TMEM176AQ96HP8 235 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 TMEM106CQ9BVX2 250 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 PRDM10Q9NQV6 1147 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 TMEM39AQ9NV64 488 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 INPP5FQ9Y2H2 1132 aa15.21■□□□□ 0.02
USP39-220ENST00000613444 ANKRD62A6NC57 917 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 PODXLO00592 558 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 B4GALT3O60512 393 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 TACC1O75410 805 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 TMEM253P0C7T8 217 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 ITGB8P26012 769 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 SSTR3P32745 418 aaPredicted RBP15.2■□□□□ 0.02
USP39-220ENST00000613444 RPL9P32969 192 aaKnown RBP15.2■□□□□ 0.02
USP39-220ENST00000613444 ACAD10Q6JQN1 1059 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 CD300LGQ6UXG3 332 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 TTC39CQ8N584 583 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 RNF10Q8N5U6 811 aaKnown RBP15.2■□□□□ 0.02
USP39-220ENST00000613444 ZNF592Q92610 1267 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 CYFIP2Q96F07 1278 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 THAP2Q9H0W7 228 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 PCDHGC3Q9UN70 934 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 L1RE1Q9UN81 338 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 NCANO14594 1321 aa15.2■□□□□ 0.02
USP39-220ENST00000613444 A0A0A6YYK5 440 aaPredicted RBP15.19■□□□□ 0.02
USP39-220ENST00000613444 CASTOR2A6NHX0 329 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 MOCS3O95396 460 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 AARSP49588 968 aaKnown RBP eCLIP15.19■□□□□ 0.02
USP39-220ENST00000613444 NOMO3P69849 1222 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 CENPCQ03188 943 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 TUSC3Q13454 348 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 GLB1LQ6UWU2 654 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 KIF18AQ8NI77 898 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 RABGGTAQ92696 567 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 ARHGEF26Q96DR7 871 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 TRIM43BA6NCK2 446 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 ABCB4P21439 1286 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 DSC1Q08554 894 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.19■□□□□ 0.02
USP39-220ENST00000613444 TRIM72Q6ZMU5 477 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 TOP6BLQ8N6T0 577 aa15.19■□□□□ 0.02
USP39-220ENST00000613444 TRIM43Q96BQ3 446 aaPredicted RBP15.19■□□□□ 0.02
USP39-220ENST00000613444 PUF60Q9UHX1 559 aaKnown RBP15.19■□□□□ 0.02
USP39-220ENST00000613444 BUB1O43683 1085 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 DDHD2O94830 711 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 CDH5P33151 784 aaPredicted RBP15.18■□□□□ 0.02
USP39-220ENST00000613444 NOMO2Q5JPE7 1267 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 NAA35Q5VZE5 725 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 DPH6Q7L8W6 267 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 DEFB128Q7Z7B8 93 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 ZNF280BQ86YH2 543 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 PASD1Q8IV76 773 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 WDTC1Q8N5D0 677 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 CPA5Q8WXQ8 436 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 NT5C1AQ9BXI3 368 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 KIAA0355O15063 1070 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 HCRTO43612 131 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 TCEAL1Q15170 157 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 UNC93AQ86WB7 457 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 PDCL2Q8N4E4 241 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 APPL2Q8NEU8 664 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 CTNNBL1Q8WYA6 563 aaPredicted RBP15.18■□□□□ 0.02
USP39-220ENST00000613444 DDX27Q96GQ7 796 aaKnown RBP15.18■□□□□ 0.02
USP39-220ENST00000613444 SENP8Q96LD8 212 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 TBC1D13Q9NVG8 400 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 PCDHGC5Q9Y5F6 944 aa15.18■□□□□ 0.02
USP39-220ENST00000613444 O00370 1275 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 CYB561D2O14569 222 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 FAM163BP0C2L3 166 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 VDRP11473 427 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 CD19P15391 556 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 LMO2P25791 158 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 CASQ1P31415 396 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 PTP4A2Q12974 167 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 MON1BQ7L1V2 547 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 OSTM1Q86WC4 334 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 RFFLQ8WZ73 363 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 NOX5Q96PH1 765 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 OSGEPQ9NPF4 335 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 COG5Q9UP83 839 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 PCDHB7Q9Y5E2 793 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 COL4A6Q14031 1691 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 GABRDO14764 452 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 HUS1O60921 280 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 LSM8O95777 96 aaKnown RBP15.17■□□□□ 0.02
USP39-220ENST00000613444 TIMP1P01033 207 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 EN2P19622 333 aaPredicted RBP15.17■□□□□ 0.02
USP39-220ENST00000613444 WARSP23381 471 aaKnown RBP15.17■□□□□ 0.02
USP39-220ENST00000613444 RFC2P35250 354 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 GPC5P78333 572 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 TIGD5Q53EQ6 642 aa15.17■□□□□ 0.02
USP39-220ENST00000613444 DENND1BQ6P3S1 775 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms