RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PDHBP11177 359 aa21.4■■□□□ 1.02
UPF1-207ENST00000599848 IFT88Q13099 833 aa21.4■■□□□ 1.02
UPF1-207ENST00000599848 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.4■■□□□ 1.02
UPF1-207ENST00000599848 HS6ST3Q8IZP7 471 aa21.4■■□□□ 1.02
UPF1-207ENST00000599848 VTA1Q9NP79 307 aa21.4■■□□□ 1.02
UPF1-207ENST00000599848 TRAF3IP3Q9Y228 551 aa21.4■■□□□ 1.02
UPF1-207ENST00000599848 TSGA10IPQ3SY00 556 aa21.4■■□□□ 1.02
UPF1-207ENST00000599848 WWP1Q9H0M0 922 aa21.4■■□□□ 1.02
UPF1-207ENST00000599848 DPP3Q9NY33 737 aa21.4■■□□□ 1.02
UPF1-207ENST00000599848 THP07101 528 aa21.39■■□□□ 1.02
UPF1-207ENST00000599848 NCAM1P13591 858 aa21.39■■□□□ 1.02
UPF1-207ENST00000599848 GOLGA7BQ2TAP0 167 aa21.39■■□□□ 1.02
UPF1-207ENST00000599848 MCCC1Q96RQ3 725 aaPredicted RBP21.39■■□□□ 1.02
UPF1-207ENST00000599848 CYP26A1O43174 497 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 SOAT2O75908 522 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 RPA1P27694 616 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 RENBPP51606 427 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 HIRAP54198 1017 aaPredicted RBP21.39■■□□□ 1.01
UPF1-207ENST00000599848 C2CD2LO14523 706 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 GYG2O15488 501 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 DIAPH2O60879 1101 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 HAUS5O94927 633 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 CYP11B2P19099 503 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 AXLP30530 894 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 NAMPTP43490 491 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 RGS7P49802 495 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 PPIL2Q13356 520 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 LRRC8BQ6P9F7 803 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 ZDHHC15Q96MV8 337 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 ZCCHC2Q9C0B9 1178 aaKnown RBP21.39■■□□□ 1.01
UPF1-207ENST00000599848 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.39■■□□□ 1.01
UPF1-207ENST00000599848 HLA-DRAP01903 254 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 ARSEP51690 589 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 BTG3Q14201 252 aaPredicted RBP21.39■■□□□ 1.01
UPF1-207ENST00000599848 GPC2Q8N158 579 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 EHD4Q9H223 541 aa21.39■■□□□ 1.01
UPF1-207ENST00000599848 PTPRUQ92729 1446 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 SNAP23O00161 211 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 RPS6P62753 249 aaKnown RBP21.38■■□□□ 1.01
UPF1-207ENST00000599848 MRNIPQ6NTE8 343 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 ZC3H18Q86VM9 953 aaKnown RBP21.38■■□□□ 1.01
UPF1-207ENST00000599848 ST13P4Q8IZP2 240 aaPredicted RBP21.38■■□□□ 1.01
UPF1-207ENST00000599848 CATSPER1Q8NEC5 780 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 RPRD1AQ96P16 312 aaPredicted RBP21.38■■□□□ 1.01
UPF1-207ENST00000599848 SYTL2Q9HCH5 934 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 VPS51Q9UID3 782 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 TTC7AQ9ULT0 858 aaPredicted RBP21.38■■□□□ 1.01
UPF1-207ENST00000599848 CKBP12277 381 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 FMO5P49326 533 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 CNTN1Q12860 1018 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 CAMK2GQ13555 558 aaPredicted RBP21.38■■□□□ 1.01
UPF1-207ENST00000599848 TMEM161AQ9NX61 479 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 POLBP06746 335 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 CCDC137Q6PK04 289 aaKnown RBP21.38■■□□□ 1.01
UPF1-207ENST00000599848 KSR1Q8IVT5 923 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 GPT2Q8TD30 523 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 KCNH7Q9NS40 1196 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 DTNAQ9Y4J8 743 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 TRIM17Q9Y577 477 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 RASSF10A6NK89 507 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 RASA1P20936 1047 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 PAX3P23760 479 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 MAPK1P28482 360 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 TOB2Q14106 344 aaPredicted RBP21.38■■□□□ 1.01
UPF1-207ENST00000599848 MMGT1Q8N4V1 131 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 OXER1Q8TDS5 423 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 CHD1O14646 1710 aa21.38■■□□□ 1.01
UPF1-207ENST00000599848 DARSP14868 501 aaKnown RBP21.37■■□□□ 1.01
UPF1-207ENST00000599848 ITGALP20701 1170 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 KRT20P35900 424 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 ZRANB3Q5FWF4 1079 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 OXCT2Q9BYC2 517 aaPredicted RBP21.37■■□□□ 1.01
UPF1-207ENST00000599848 MED14O60244 1454 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 SLC9A3R1O14745 358 aaPredicted RBP21.37■■□□□ 1.01
UPF1-207ENST00000599848 ARFIP2P53365 341 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 OAZ1P54368 228 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 TMEM199Q8N511 208 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 ELMO2Q96JJ3 720 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 RRN3Q9NYV6 651 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 FDFT1P37268 417 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 CHMP1BQ7LBR1 199 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 VPS50Q96JG6 964 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 GUCA1CO95843 209 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 GUCY1A2P33402 732 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 SESN2P58004 480 aaPredicted RBP21.37■■□□□ 1.01
UPF1-207ENST00000599848 NBPF20Q3BBV1 942 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 RETSATQ6NUM9 610 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 ADA2Q9NZK5 511 aa21.37■■□□□ 1.01
UPF1-207ENST00000599848 USP10Q14694 798 aaKnown RBP21.36■■□□□ 1.01
UPF1-207ENST00000599848 RMDN2Q96LZ7 410 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 MYCBPQ99417 103 aaPredicted RBP21.36■■□□□ 1.01
UPF1-207ENST00000599848 CCNJLQ8IV13 435 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 ZFP69BQ9UJL9 534 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 RNF17Q9BXT8 1623 aaKnown RBP21.36■■□□□ 1.01
UPF1-207ENST00000599848 ZC3H11AO75152 810 aaKnown RBP eCLIP21.36■■□□□ 1.01
UPF1-207ENST00000599848 CCDC157Q569K6 752 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 MPZL3Q6UWV2 235 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 PCYOX1LQ8NBM8 494 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 RBBP8Q99708 897 aa21.36■■□□□ 1.01
UPF1-207ENST00000599848 NFKBIZQ9BYH8 718 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms