RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 SEPT11Q9NVA2 429 aaKnown RBP16.48■□□□□ 0.23
UPF1-206ENST00000598471 PUF60Q9UHX1 559 aaKnown RBP16.48■□□□□ 0.23
UPF1-206ENST00000598471 KIAA1257Q9ULG3 409 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 L1RE1Q9UN81 338 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 PDE4DIPQ5VU43 2346 aa16.48■□□□□ 0.23
UPF1-206ENST00000598471 A8MXQ7 604 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 THAP12O43422 761 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 MED7O43513 233 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 TADA2AO75478 443 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 KIF4AO95239 1232 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 CD19P15391 556 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 WARSP23381 471 aaKnown RBP16.47■□□□□ 0.23
UPF1-206ENST00000598471 LHX1P48742 406 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 NDST1P52848 882 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 ASTE1Q2TB18 679 aaPredicted RBP16.47■□□□□ 0.23
UPF1-206ENST00000598471 ZNF394Q53GI3 561 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 CHRDL2Q6WN34 429 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 TOGARAM2Q6ZUX3 1019 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 C16orf59Q7L2K0 433 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 LIMS2Q7Z4I7 341 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 NOP9Q86U38 636 aaKnown RBP16.47■□□□□ 0.23
UPF1-206ENST00000598471 C3orf58Q8NDZ4 430 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 KIAA1524Q8TCG1 905 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 SLC9A7Q96T83 725 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 YME1L1Q96TA2 773 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 MRPL45Q9BRJ2 306 aaKnown RBP16.47■□□□□ 0.23
UPF1-206ENST00000598471 DNAJB4Q9UDY4 337 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 NOCTQ9UK39 431 aaKnown RBP16.47■□□□□ 0.23
UPF1-206ENST00000598471 COLQQ9Y215 455 aaPredicted RBP16.47■□□□□ 0.23
UPF1-206ENST00000598471 FAN1Q9Y2M0 1017 aa16.47■□□□□ 0.23
UPF1-206ENST00000598471 PRG3Q9Y2Y8 225 aaPredicted RBP16.47■□□□□ 0.23
UPF1-206ENST00000598471 SCN1AP35498 2009 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 M0QZQ0 153 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 NRP1O14786 923 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 GNL1P36915 607 aaPredicted RBP16.46■□□□□ 0.23
UPF1-206ENST00000598471 RAD23BP54727 409 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 EPHB4P54760 987 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 ELAVL2Q12926 359 aaKnown RBP16.46■□□□□ 0.23
UPF1-206ENST00000598471 BTG3Q14201 252 aaPredicted RBP16.46■□□□□ 0.23
UPF1-206ENST00000598471 STILQ15468 1287 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 TIGD5Q53EQ6 642 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 SPOUT1Q5T280 376 aaKnown RBP16.46■□□□□ 0.23
UPF1-206ENST00000598471 C10orf76Q5T2E6 689 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 TAF3Q5VWG9 929 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 FAM117BQ6P1L5 589 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 TRIM72Q6ZMU5 477 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 KIAA1328Q86T90 577 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 GLYCTKQ8IVS8 523 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 PDCL2Q8N4E4 241 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 HASPINQ8TF76 798 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 SLC20A1Q8WUM9 679 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 HERVK_113Q902F9 699 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 RABGGTAQ92696 567 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 TNIP3Q96KP6 325 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 SUSD3Q96L08 255 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.46■□□□□ 0.231e-6■■□□□ 13.6
UPF1-206ENST00000598471 DESI2Q9BSY9 194 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 SYT11Q9BT88 431 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 PRO3102Q9H379 93 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 SPTLC3Q9NUV7 552 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 ADAMTS1Q9UHI8 967 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 PCDHB8Q9UN66 801 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 ADGRG1Q9Y653 693 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 SLC4A7Q9Y6M7 1214 aa16.46■□□□□ 0.23
UPF1-206ENST00000598471 A0A087X0T9 212 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 GOLGA6L9A6NEM1 432 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 B4GALT3O60512 393 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 LCA5LO95447 670 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 CYP11A1P05108 521 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 FAM228BP0C875 321 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 VDRP11473 427 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 TYMPP19971 482 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 BRCC3P46736 316 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 SLC11A1P49279 550 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 ALDH7A1P49419 539 aaKnown RBP16.45■□□□□ 0.22
UPF1-206ENST00000598471 GFPT1Q06210 699 aaPredicted RBP16.45■□□□□ 0.22
UPF1-206ENST00000598471 SGO2Q562F6 1265 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 WSCD1Q658N2 575 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 PPP1R2P3Q6NXS1 205 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 SLC4A11Q8NBS3 891 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 WHAMMQ8TF30 809 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 KBTBD7Q8WVZ9 684 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 ZNF689Q96CS4 500 aaPredicted RBP16.45■□□□□ 0.22
UPF1-206ENST00000598471 HEXIM2Q96MH2 286 aaKnown RBP16.45■□□□□ 0.22
UPF1-206ENST00000598471 ZBED2Q9BTP6 218 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 ELOVL4Q9GZR5 314 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 ADAM28Q9UKQ2 775 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 PPP2R2CQ9Y2T4 447 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 CEP83Q9Y592 693 aa16.45■□□□□ 0.22
UPF1-206ENST00000598471 SF3B1O75533 1304 aaKnown RBP eCLIP16.45■□□□□ 0.22
UPF1-206ENST00000598471 DDX3XO00571 662 aaKnown RBP eCLIP16.44■□□□□ 0.22
UPF1-206ENST00000598471 GALTP07902 379 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 MMEP08473 750 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 CHRNB2P17787 502 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 LAG3P18627 525 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 PCSK1P29120 753 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 MAGEA1P43355 309 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 BCAR1P56945 870 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 FMO1Q01740 532 aa16.44■□□□□ 0.22
UPF1-206ENST00000598471 CCDC122Q5T0U0 273 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms