RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 A0A0U1RQG5 324 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 CCND3P30281 292 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 TWNKQ96RR1 684 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 CELF4Q9BZC1 486 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 HMX1Q9NP08 348 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 SNTG2Q9NY99 539 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 C2CD2Q9Y426 696 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 HES2Q9Y543 173 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 TRIP12Q14669 1992 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 BHMG1C9JSJ3 638 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 MYO1FO00160 1098 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 OAS2P29728 719 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 RAD23BP54727 409 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 EPHB4P54760 987 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 PURAQ00577 322 aaKnown RBP18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 CDC42EP1Q00587 391 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 DCAF4L1Q3SXM0 396 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 SLC27A1Q6PCB7 646 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 KIF12Q96FN5 646 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 HPDLQ96IR7 371 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 NAP1L3Q99457 506 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 SLITRK6Q9H5Y7 841 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 VRTNQ9H8Y1 702 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 DPP3Q9NY33 737 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 PCDHGC3Q9UN70 934 aa18.11■□□□□ 0.49
SHKBP1-216ENST00000598201 TCRBV7S2A1N4TA0A589 114 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 TTI1O43156 1089 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 LSM8O95777 96 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 MYCP01106 439 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 FAM153BP0C7A2 387 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 EIF4BP23588 611 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 ATICP31939 592 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 YWHAEP62258 255 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 FAM153CQ494X1 144 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 DENND1BQ6P3S1 775 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 ZMAT2Q96NC0 199 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 VIPAS39Q9H9C1 493 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 FAM153AQ9UHL3 310 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 SEPT4O43236 478 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 PROSCO94903 275 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 AKR1A1P14550 325 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 CD19P15391 556 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 CDH5P33151 784 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 RWDD2BP57060 319 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 SNX17Q15036 470 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 SLC4A11Q8NBS3 891 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 TMEM35BQ8NCS4 154 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 ARMC5Q96C12 935 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 ELOVL4Q9GZR5 314 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 RNF19AQ9NV58 838 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 ITGA11Q9UKX5 1188 aa18.1■□□□□ 0.49
SHKBP1-216ENST00000598201 CITO14578 2027 aa18.09■□□□□ 0.49
SHKBP1-216ENST00000598201 MTFR1Q15390 333 aa18.09■□□□□ 0.49
SHKBP1-216ENST00000598201 COL13A1Q5TAT6 717 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-216ENST00000598201 SEL1L2Q5TEA6 688 aa18.09■□□□□ 0.49
SHKBP1-216ENST00000598201 NOTUMQ6P988 496 aa18.09■□□□□ 0.49
SHKBP1-216ENST00000598201 EMBQ6PCB8 327 aa18.09■□□□□ 0.49
SHKBP1-216ENST00000598201 DDX42Q86XP3 938 aaKnown RBP eCLIP18.09■□□□□ 0.49
SHKBP1-216ENST00000598201 PRELID2Q8N945 189 aa18.09■□□□□ 0.49
SHKBP1-216ENST00000598201 FAXDC2Q96IV6 333 aa18.09■□□□□ 0.49
SHKBP1-216ENST00000598201 ZNF333Q96JL9 665 aa18.09■□□□□ 0.49
SHKBP1-216ENST00000598201 NXF3Q9H4D5 531 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-216ENST00000598201 MRPL47Q9HD33 250 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-216ENST00000598201 TCRBV5S1A1TA0A578 114 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 C17orf102A2RUQ5 167 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 O00370 1275 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 POLR3GO15318 223 aaPredicted RBP18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 CILPO75339 1184 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 ECHS1P30084 290 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 HOXC8P31273 242 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 RPL7AP62424 266 aaKnown RBP18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 RBP5P82980 135 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 PAK2Q13177 524 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 LLGL1Q15334 1064 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 PPP1R2P3Q6NXS1 205 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 TSEN2Q8NCE0 465 aaKnown RBP18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 CAVIN3Q969G5 261 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 SNX27Q96L92 541 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 UNC93B1Q9H1C4 597 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 PARVAQ9NVD7 372 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 CYTH4Q9UIA0 394 aa18.08■□□□□ 0.49
SHKBP1-216ENST00000598201 TRIP11Q15643 1979 aa18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 PPEF2O14830 753 aa18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 TLR3O15455 904 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 DUSP11O75319 330 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 C6orf222P0C671 652 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 SLC1A1P43005 524 aa18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 NT5DC4Q86YG4 428 aa18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 SLC13A5Q86YT5 568 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 CD302Q8IX05 232 aa18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 CCDC26Q8TAB7 109 aa18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 FEZF2Q8TBJ5 459 aa18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 KATNAL1Q9BW62 490 aa18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 ZNF518BQ9C0D4 1074 aa18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 SCINQ9Y6U3 715 aa18.08■□□□□ 0.48
SHKBP1-216ENST00000598201 GOLGA6L10A0A0M3HER8 536 aa18.07■□□□□ 0.48
SHKBP1-216ENST00000598201 CALB1P05937 261 aa18.07■□□□□ 0.48
SHKBP1-216ENST00000598201 PAEPP09466 180 aa18.07■□□□□ 0.48
SHKBP1-216ENST00000598201 CCL5P13501 91 aa18.07■□□□□ 0.48
SHKBP1-216ENST00000598201 TAS2R40P59535 323 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms