RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MTMR11A4FU01 709 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 BTBD18B2RXH4 712 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 ABLIM1O14639 778 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 MEFVO15553 781 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-210ENST00000597618 CTDNEP1O95476 244 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 HARSP12081 509 aaKnown RBP11.03□□□□□ -0.64
TRIM28-210ENST00000597618 DRD1P21728 446 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 MCM7P33993 719 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 NPTX2P47972 431 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 AARSP49588 968 aaKnown RBP eCLIP11.03□□□□□ -0.64
TRIM28-210ENST00000597618 PEX3P56589 373 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 RUNX3Q13761 415 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 NOLC1Q14978 699 aaKnown RBP eCLIP11.03□□□□□ -0.645e-7■■□□□ 14.3
TRIM28-210ENST00000597618 VEPH1Q14D04 833 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 FBXO43Q4G163 708 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 LRSAM1Q6UWE0 723 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 ATAD1Q8NBU5 361 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 ACDQ96AP0 544 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 FAM83CQ9BQN1 747 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 SCNM1Q9BWG6 230 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 POLD4Q9HCU8 107 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 GKN1Q9NS71 199 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 ARHGAP28Q9P2N2 729 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 EBF1Q9UH73 591 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 LHX6Q9UPM6 363 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 SLC27A5Q9Y2P5 690 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 RBM19Q9Y4C8 960 aaKnown RBP11.03□□□□□ -0.64
TRIM28-210ENST00000597618 TIMM13Q9Y5L4 95 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-210ENST00000597618 NUP210Q8TEM1 1887 aaPredicted RBP11.03□□□□□ -0.64
TRIM28-210ENST00000597618 LAMA5O15230 3695 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 TRIP11Q15643 1979 aa11.03□□□□□ -0.64
TRIM28-210ENST00000597618 KHNYNO15037 678 aaKnown RBP11.02□□□□□ -0.65
TRIM28-210ENST00000597618 DCLK1O15075 740 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 DTNBO60941 627 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 EGFP01133 1207 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 OR52Z1P0C646 297 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 TYMPP19971 482 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 LRPAP1P30533 357 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 GBP1P32455 592 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 CYP4F8P98187 520 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 RING1Q06587 406 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 ORC2Q13416 577 aaPredicted RBP11.02□□□□□ -0.65
TRIM28-210ENST00000597618 TRIM29Q14134 588 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 SLC10A6Q3KNW5 377 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 OVOS1Q6IE37 1185 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 ARMCX5Q6P1M9 558 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 DSTYKQ6XUX3 929 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 SYT13Q7L8C5 426 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 TAS1R3Q7RTX0 852 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 CMTM8Q8IZV2 173 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 DRC1Q96MC2 740 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 SEPT5Q99719 369 aaPredicted RBP11.02□□□□□ -0.65
TRIM28-210ENST00000597618 SMG9Q9H0W8 520 aaKnown RBP11.02□□□□□ -0.65
TRIM28-210ENST00000597618 EBF3Q9H4W6 596 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 PLEKHA5Q9HAU0 1116 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 HPS4Q9NQG7 708 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 KMT5AQ9NQR1 393 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 ANKFY1Q9P2R3 1169 aa11.02□□□□□ -0.65
TRIM28-210ENST00000597618 GCN1Q92616 2671 aaKnown RBP11.02□□□□□ -0.65
TRIM28-210ENST00000597618 SETXQ7Z333 2677 aaKnown RBP11.01□□□□□ -0.65
TRIM28-210ENST00000597618 TOM1L1O75674 476 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 SOAT2O75908 522 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 LARGE1O95461 756 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 TOP3BO95985 862 aaKnown RBP11.01□□□□□ -0.65
TRIM28-210ENST00000597618 FDPSP14324 419 aaKnown RBP11.01□□□□□ -0.65
TRIM28-210ENST00000597618 CYP3A5P20815 502 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 AVPR1AP37288 418 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 CCT6AP40227 531 aaKnown RBP11.01□□□□□ -0.65
TRIM28-210ENST00000597618 TUFMP49411 452 aaKnown RBP11.01□□□□□ -0.65
TRIM28-210ENST00000597618 BFSP1Q12934 665 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 STRN3Q13033 797 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 DMC1Q14565 340 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 TAF12Q16514 161 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 PMS2CLQ68D20 193 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 CC2D1AQ6P1N0 951 aaPredicted RBP11.01□□□□□ -0.65
TRIM28-210ENST00000597618 CYP2U1Q7Z449 544 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 TTC9BQ8N6N2 239 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 RPLP0P6Q8NHW5 317 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 CHFRQ96EP1 664 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 KIF12Q96FN5 646 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 P2RY13Q9BPV8 354 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 LPIN3Q9BQK8 851 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 SLC46A2Q9BY10 475 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 KIF9Q9HAQ2 790 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 C17orf75Q9HAS0 396 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 IL21Q9HBE4 155 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 POLR3BQ9NW08 1133 aaPredicted RBP11.01□□□□□ -0.65
TRIM28-210ENST00000597618 UBQLN1Q9UMX0 589 aaKnown RBP11.01□□□□□ -0.65
TRIM28-210ENST00000597618 NEUROG3Q9Y4Z2 214 aa11.01□□□□□ -0.65
TRIM28-210ENST00000597618 OTOL1A6NHN0 477 aaPredicted RBP11□□□□□ -0.65
TRIM28-210ENST00000597618 XPOTO43592 962 aaKnown RBP11□□□□□ -0.65
TRIM28-210ENST00000597618 HIP1RO75146 1068 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 CXCL8P10145 99 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 ODC1P11926 461 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 ATF6P18850 670 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 PAX3P23760 479 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 DDX6P26196 483 aaKnown RBP eCLIP11□□□□□ -0.65
TRIM28-210ENST00000597618 PDGFRLQ15198 375 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 ANKRD1Q15327 319 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 ECM1Q16610 540 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms