RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PIGRP01833 764 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 PFKFB1P16118 471 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 GAP43P17677 238 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 LILRA4P59901 499 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 OVOS1Q6IE37 1185 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 CENPPQ6IPU0 288 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 CEP57L1Q8IYX8 460 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 TTC8Q8TAM2 541 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 ATRIPQ8WXE1 791 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 FAM3CQ92520 227 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 RUBCNQ92622 972 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 DNASE1L2Q92874 299 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 IRF7Q92985 503 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 SLITRK6Q9H5Y7 841 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 LMAN1LQ9HAT1 526 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 USP25Q9UHP3 1055 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 MAFFQ9ULX9 164 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 HPSEQ9Y251 543 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 MRPS17Q9Y2R5 130 aaKnown RBP13.52□□□□□ -0.25
UPF1-203ENST00000594504 COL4A2P08572 1712 aa13.52□□□□□ -0.25
UPF1-203ENST00000594504 ZFHX2Q9C0A1 2572 aaPredicted RBP13.52□□□□□ -0.25
UPF1-203ENST00000594504 DMDP11532 3685 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 PTPRZ1P23471 2315 aaPredicted RBP13.51□□□□□ -0.25
UPF1-203ENST00000594504 A0A1B0GVL5 298 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 FRMD3A2A2Y4 597 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 OR6C75A6NL08 312 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 TULP1O00294 542 aaPredicted RBP13.51□□□□□ -0.25
UPF1-203ENST00000594504 PIRO00625 290 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 ZNF263O14978 683 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 SLFN14P0C7P3 912 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 IDEP14735 1019 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 TYMPP19971 482 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 CCNE1P24864 410 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 MAGEA9P43362 315 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 RPS9P46781 194 aaKnown RBP13.51□□□□□ -0.25
UPF1-203ENST00000594504 SOX9P48436 509 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 EPHB3P54753 998 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 GTF2BQ00403 316 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 KYAT1Q16773 422 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 C9orf57Q5W0N0 161 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 CNNM4Q6P4Q7 775 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 DNAJB7Q7Z6W7 309 aaPredicted RBP13.51□□□□□ -0.25
UPF1-203ENST00000594504 SFR1Q86XK3 245 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 MFSD6LQ8IWD5 586 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 OR10T2Q8NGX3 314 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 LRRC3BQ96PB8 259 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 TRIM9Q9C026 710 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 ST6GALNAC4Q9H4F1 302 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 PIAS3Q9Y6X2 628 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 SCN1AP35498 2009 aa13.51□□□□□ -0.25
UPF1-203ENST00000594504 GOLGA6L4A6NEF3 574 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 MAN2B1O00754 1011 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 XPOTO43592 962 aaKnown RBP13.5□□□□□ -0.25
UPF1-203ENST00000594504 ACTN4O43707 911 aaKnown RBP13.5□□□□□ -0.25
UPF1-203ENST00000594504 LILRB5O75023 590 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 SYKP43405 635 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 ALDH1A3P47895 512 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 FOXK2Q01167 660 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 SCARA3Q6AZY7 606 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 ARMCX5Q6P1M9 558 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 GAREM2Q75VX8 874 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 ERMP1Q7Z2K6 904 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 LRRTM3Q86VH5 581 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 ARID3BQ8IVW6 561 aaPredicted RBP13.5□□□□□ -0.25
UPF1-203ENST00000594504 CCDC65Q8IXS2 484 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 FSIP1Q8NA03 581 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 LEMD2Q8NC56 503 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 ZBTB44Q8NCP5 570 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 ZSWIM2Q8NEG5 633 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 DEPDC1BQ8WUY9 529 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 NELL1Q92832 810 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 ZFYVE19Q96K21 471 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 C7orf25Q9BPX7 421 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 LPIN3Q9BQK8 851 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 MKNK1Q9BUB5 465 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 ATXN3LQ9H3M9 355 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 TRPV4Q9HBA0 871 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 OLFML3Q9NRN5 406 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 PANK4Q9NVE7 773 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 ZSCAN32Q9NX65 697 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 PCDHGA2Q9Y5H1 932 aa13.5□□□□□ -0.25
UPF1-203ENST00000594504 ANO9A1A5B4 782 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 SLC38A8A6NNN8 435 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 ARNTLO00327 626 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 CHRNB1P11230 501 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 ODC1P11926 461 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 HOXC13P31276 330 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 NDUFA8P51970 172 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 ASIC1P78348 528 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 CYP4F8P98187 520 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 KCNA1Q09470 495 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 PLD1Q13393 1074 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 MYBPC2Q14324 1141 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 GAS6Q14393 721 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 TMEM132DQ14C87 1099 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 SLC39A12Q504Y0 691 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 WDR44Q5JSH3 913 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 CRELD2Q6UXH1 353 aaPredicted RBP13.49□□□□□ -0.25
UPF1-203ENST00000594504 ZNF720Q7Z2F6 126 aa13.49□□□□□ -0.25
UPF1-203ENST00000594504 CD302Q8IX05 232 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms